Salvia hispanica (chia): 125185136
Help
Entry
125185136 CDS
T09851
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125185136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125185136
03036 Chromosome and associated proteins [BR:
shis03036
]
125185136
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125185136
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125185136
PBAF complex
125185136
GBAF(ncBAF) complex
125185136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Polycystin_dom
ZZ
DUF5349
DUF7685
Motif
Other DBs
NCBI-GeneID:
125185136
NCBI-ProteinID:
XP_047937587
LinkDB
All DBs
Position
4:complement(13391898..13397641)
Genome browser
AA seq
775 aa
AA seq
DB search
MPASSSEARARWRKRKRDNSVARKSKLKEHDDDILNDNDDDDDPDLDPPQNHLESEDDPQ
IRSSDRTAQITGEKGDEKLVAGGLKLCEFPVAIKRVINRPHSSVFRIVEFERAARYGDGI
GLGQSRVPVLENISYRQLQALSAVPRDNPALLGVPSEETASASGGGSYVIRPPRIVAGSG
VTKRLGSAGRVHVVPVHSEWFSPNSVHRLERQVVPHFFSGKSTEHTPEKYMECRNFIVAM
YMENPEKNLAVANCQGLEAGIDNEDLTRIFRFLDHWGIINYCATPPKHEAPKGGTYLCED
SNNELHVPLSALKSIDSLIKFDKPKCRLKATDVYPELACQQEEDSDIDSAIREKLSEHQC
NCCSRPIPAVYYQSQKEVDARLCLDCYHEAGFIAGHSSLDFMKENSTKDYGDLDGDSWSD
QETLLLLEGMQLYNENWNKIAEHVGSKSKAQCILHFVRLPLDGAPLDSIDVPSTSGSSNL
SNHERSEPISNGICLEGEDTERKFPFSSSGNPVMSLVAFLASALGPRVAAACAHASLGSL
SKESSKEGSPGGSLSQHDAEGATLSAEKVISAAEDGLAAAAMKAKLFADHEEREIQRLSA
NIINHQLKRLELKLKQFAEIETLLMRECEQMERTRQRIAAERALVMSGQFGSAGVQRPMG
LPGVSNCNSAMNNYAGNRQHVQGSQQPFVPGYGNNQPIHPHMSLMQQQQQQQQQQQQQQQ
QQQQGMYGLGPRLPLSAIHPSSSASNTMFNPTSNSQPSLGYPMLRPLSGTKSGLG
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcctcctcagaagcaagagcaaggtggagaaagcggaaaagggataactca
gtggcgcgcaagtctaaactgaaagagcatgatgatgacatacttaatgataacgatgac
gatgatgacccagatctggaccccccacagaaccatctggaaagtgaagacgatcctcaa
attcgtagttctgataggacagcccagattacaggagagaaaggggatgaaaagctagtt
gctggtggactgaagttatgtgagtttccagttgctattaagagggtgataaataggccc
cactcatctgtcttccgaattgtggagtttgagagggctgcaagatatggggatggcata
ggcctagggcagagtagggtgccggtgttggagaatatttcttatcggcagctgcaggca
ctttctgcagtgcctcgagacaatcctgctcttttaggggttccctcagaggagactgca
agtgctagtgggggtggttcatatgtgatcaggccacctaggatagtcgctggcagtggt
gttactaaaaggctcgggagcgcaggtcgtgttcatgttgtcccagtacattcagaatgg
ttttcaccaaattcagtgcatagattggagagacaagtggttccacattttttttctgga
aaatccacagaacatacacctgaaaagtatatggaatgtcggaatttcattgttgctatg
tatatggaaaaccctgaaaagaacctagctgtggctaactgtcagggcctagaagctggt
attgataatgaggacttaactcgaatttttaggtttctggatcactgggggattatcaac
tattgtgcaactcctcctaagcatgaggccccaaagggtggaacttacttgtgtgaggat
tcaaataacgaacttcacgtccctttgtctgctttgaaatctatagacagcttaatcaag
tttgacaagccaaaatgtaggctgaaggcaactgatgtttatccagaacttgcatgtcag
caggaagaggattctgacattgacagtgctattagagaaaaattatccgagcatcaatgc
aactgttgttcacgacctattcctgcagtgtactaccagtcgcagaaggaggttgatgcg
agactctgtttggattgctatcatgaggcaggattcattgctggtcactctagccttgat
tttatgaaagagaattccacgaaagattatggagacctggacggggatagttggtctgac
caggaaacgttgctgcttcttgagggaatgcagctttataatgagaattggaataaaatt
gcagagcatgttggctccaaatcaaaagcacagtgcattctccattttgtccgtcttcct
ctggatggcgctccactggacagtattgatgttccaagcacatctggttcgtcgaatttg
agcaatcatgaaagatcagagccaatttcaaatggaatctgcttggaaggggaagatact
gaaagaaaatttcctttctcaagctctggaaacccagtgatgtctctggtggcgtttctt
gcttctgcattggggccaagagtggctgcagcctgtgcccatgcatctttgggttcattg
tctaaggagagtagcaaagaagggagtcctggaggttctttgagccaacatgatgctgaa
ggtgctacactatctgctgaaaaagtgatctctgcggccgaagatggccttgctgcagca
gctatgaaggcaaagctttttgctgatcatgaagagcgtgaaatccagcggttatctgct
aatattattaaccatcagttaaagcgattggagctaaagttgaagcagtttgcagaaatt
gaaacattgctaatgagagaatgtgagcagatggaaaggacaaggcagaggattgctgcc
gaacgggcccttgtgatgtcgggacagtttggttctgctggggtgcaacggccaatgggg
ctgccaggtgtcagtaattgtaattctgctatgaacaattatgcaggaaatagacagcac
gttcaaggctcccagcaacctttcgttcctggatacggaaacaaccaacccatacatcct
cacatgtccctgatgcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaa
caacaacagcagggaatgtatggtctgggtcctaggttgcccctttcagctatacatcca
tcttcttcagcctctaataccatgtttaacccgacatcaaattctcagccatctctcggc
tatccaatgctcagaccactatctgggactaaatctggtttaggctag
DBGET
integrated database retrieval system
