Salvia hispanica (chia): 125185681
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Entry
125185681 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125185681 isoform X1
KO
K24155
rabconnectin-3a
Organism
shis
Salvia hispanica (chia)
Pathway
shis04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
125185681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125185681
Membrane trafficking [BR:
shis04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
125185681
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
125185681
RAVE complex
125185681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_C
EIF3I
ANAPC4_WD40
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
125185681
NCBI-ProteinID:
XP_047938214
LinkDB
All DBs
Position
4:complement(34274176..34287883)
Genome browser
AA seq
2482 aa
AA seq
DB search
MAEATSAAVSPPPPPLDVGSRFPLHLIKSEIIPPAPSRSRCGSAAAADFLLDFAGHSWIA
YGAASLVVISHLPDPLSEAETRIGPIYHQVIELSREADAHVSAVCWSPATPSIGELAVAL
GDRIFLLSYGGDENPTSSFCWRQTTMLVLSMKVEAIQWTVSGDGIISGGIDVVMWRKKEK
SWEIAWSFKPKIPQVLVSTTWSACGLSATAPWSEVQVGGSSAFPNDAGDCVLVFQFDGHS
KYPQHELRHPMPIGMIQWRPSTGKPPSKHAKHAQRPILLTCCLDGSVRLWGEIDDGRIRR
NVKDNSDHKAKLSFCVLSVIEVNQTLNGILGSDVFVRWAMDVEGVTVNDKEVCYYSCSDN
LQHDTAARCEWLIGFGRERVITMWAIHCLDDFAPVRFPRVTLWKKHDLVSSVVEPSQLLM
HKVCIMRTQVSGSPALCSLVQLSPCNSFSWWQLYSQTSASMKLESASDVHANSSLAACAK
GVLEVEGHIDKILQIAVHPFSFEVKLAASLDRNGMLLFWSFSTFFNSHIGQPISTPSWKL
CGKPAIIDHSPKYTCLSWAPTVLGDSNVLLMGHSNGIDCFLVKVLKNNEQKITYHNLFSL
PLVIEGQEQVLTRMSSIPLPCNCDGNSVSSKFLLIALWMDTFRALSWEITIHCDYSQGSC
LNDHWKTFEGDFSGKQYLVAVDPASSVIPVTNNDDKVTSCAVVCPSDLVSSSQKLSSPDE
IGSTCYAYHMITGCFNGSLKLWRSMPLDSLSSDKKWALVGVLTSQQGPILNVSMSPCGQK
IASASKNSLSKNHSTTLCIWECLHVKGVGSFMLEDKLCFDGVIVAFNWLKMGIGQLLLAV
CSQNDLRIYASRRRGGQGELKSEKPMEENAWICIAAKSNLPPISDFLWGPKGTAVVVHDK
YFSIFSHFLSLSDYTGSHDIVHYSTFTDSEKALSKIGGKYESQPPAKMKNNVESFQWYSY
ATEKCFWSMSEIAEKIGGSLPLFHPEALFNNLCSGNWKRAFIALRHLAKHLASGTLSEQG
HGAKMPSSLVSPVPLSDYLDGILPLHSSGNVFHWSTSQLHTGLFNSVPEGGYGAHNSTMT
SSLSKSEFDGFIESLESLHSYNCINTDEKIQAIALVDLLREVGNANSTSAYGSLDEPGRR
FWVAVRFQQLYFAQRYSRLPLVEEFVVSPGLIGWAFHSDCHDNLFNSLLPTEPSWEEMRS
MGVGFWYTNVSQLRVKMEKLARQQYMKKKDPKACLLLYIVLNRLQVLAGLFKISKDEKDK
PLAGFLFRNFQEDKHKAAAIKNAYVLLGKHQLELAVAFFLLGGDASSAVTVCAKNLGDEQ
LALVICRLIEGCGGPLECNLIVKFLLPSALSKGDFWMASFLEWLLGNYPQSFFRMLGAEV
GSEVNISVLSSSHTCFLDPSIGQYCLMLANKTKLKNAVGELNAANLCRWASLMNITSFRR
CGLPLEALESLLSSVSIFGGPTHGSLTHNPTGDLPAELTQPSVYENSSNWMLEETSFHII
SYCKLYLALQYMSTLMKEHPSSLENDRPSSFKEAINLEVDRQDFEKLLKEFEDKLTEAIT
YFQQKFLLVPLHLIKMIVLSLCHNGLDFIGHYILQDYAPKFLSQEKSNRPDDLFCSPSNL
FKATEEMLSLYVKYIVASCKNCLRSTYFSVDSLSSEGRLCWLTVWGLSDQGMTETFMCLR
AMLQLFLRSQAVDFQKLLLFVVSLFEFHILFATAWLQKNFKAIIVSIGPILSNLLDESGS
NGLKMENLNKLISEVMELLAHGLVYVESGQKQEPSGAVSDNKAWHIISSSFWVCMSKFLE
HQLSTLPEVPEDFFSSGPPPVLELDGNNLQQQARLTSSTLVQFLKLTCSDISFYCSKQFA
TYLLQEANTLNKNNLSSFENGLYQSGGENINPMIEYPKPLDHGNELPDLDKLRNIFAGSE
ILRGTFEKEYHNWLPYIKQKSSSGWSYAYASITAEFGLEENWDKEDGFGSPRAIGSPLAC
TTPDHPFKTSDDNNTCDSKRVMPFQNPKEICRRNGELLEALCINSIDQSQATLASNKKGI
VYFNWEDGIPDRYKAECIWGEADWPHNGWAGYESTPVPTNGSSAVGFGSKKATHLGLGGA
TIGAGSLVQPGGELTGGGAFGIPGYAGMGASSLDWDLQESFDEFLDPPATIDSVRTSAFA
SHPCRPFFLVGSSNTRIYLWEFGKGTATATYGVLPAANVPTPYALATVSAARFDHCGHRF
VTAALDGTVCTWQLEVGGRSNIHPTESSVCFNNHTADVTYVTASGSIVAAAGYSSNGVNV
VVWDTLAPPATSQASIMCHEGGARSLAVFDNDIGSGSVSPLILTGGKGGDVGLHDFRYIA
TGRTKKHKHLDPGEHNMNASSSVDMRSKTGDQNRNGMLWYIPKAHSGSITKISTIPNTSF
FLTGSKDGDVKLWDAKRAKLVFHWPKLHERHTFLQPSSRGFGGVVRAAVTDIQVVSNGFL
TCGGDGIVKYIGFQGNPLETTN
NT seq
7449 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggctacttcggccgccgtttctcccccgccgccgccgctcgatgtcggctcc
cgcttcccgctccacttaatcaaatccgagataattcctcccgctccctcacgatcccgc
tgtggatccgcggcggccgccgatttcctgctcgacttcgccgggcactcatggatcgcc
tacggcgccgcctctctcgtagtcatatctcacttgccagaccctctatcggaagcagaa
acgagaatcgggccgatatatcatcaagtgatcgagctatctcgagaagccgacgctcac
gtttccgccgtgtgctggtcccctgcgacgccgtccattggcgagcttgcggtggcgttg
ggtgatcgcatttttttgttatcgtatggcggagatgaaaatccaaccagttctttttgt
tggaggcagactacaatgcttgtcttatccatgaaggttgaggccatccagtggacagtt
tcaggagatggaataatttcaggaggcattgatgttgtaatgtggagaaagaaggagaag
tcgtgggaaatagcttggtcattcaaaccaaaaatccctcaagttcttgtctctaccacc
tggagtgcctgtggtctttcagctacggcaccatggagtgaagtacaagttggaggttcg
tctgctttccccaatgatgcaggagattgtgtattagtttttcaatttgatggacattct
aaatatccacaacatgagctgcgtcatccaatgcctattgggatgatacagtggaggcct
tcaacaggaaaaccaccaagtaagcatgctaagcatgcccagagaccaatcttgttaact
tgctgccttgatggatctgttaggttatggggtgaaattgatgatgggaggattagaaga
aatgtaaaggataatagtgaccacaaagcaaagttatctttttgtgtcctttctgtaatc
gaggtaaaccaaacactgaatggtattctgggctctgatgtctttgtaagatgggcaatg
gacgttgaaggtgtgactgttaatgataaagaagtatgctactattcatgctcagacaat
cttcagcatgatacagctgctagatgcgagtggttgattggttttggtcgagaaagggtg
ataacgatgtgggctattcactgtcttgatgattttgctccagtgagattcccaagggtt
actttatggaagaagcatgatctagtcagctctgtagtggaaccaagtcaattgcttatg
cataaagtgtgcattatgaggactcaagtttctggctctcccgctctttgctcattggtt
caactgtcaccttgtaattcattctcttggtggcaattatattctcaaacctcagctagc
atgaaattggaatctgctagtgacgttcatgccaacagctctttggcagcttgtgccaaa
ggagtgctagaagttgaaggtcacatcgataaaattttacagattgcagttcatccgttt
tcttttgaagttaaactcgctgcttctttagatagaaatggaatgcttcttttttggtca
ttttcaacctttttcaatagtcatattggccagccaatatctacaccctcttggaaactc
tgtggaaaacctgctattatcgatcactctcctaaatacacgtgcttgagttgggccccc
acagtgctaggtgacagtaatgttcttctcatgggacattcaaatggcattgactgtttc
ttggttaaggttttgaaaaacaatgaacagaagatcacttatcacaatttattttctttg
cccttagttattgaaggtcaagaacaagtgctaactagaatgagctccatccctttgcct
tgcaactgtgatgggaactccgtttctagtaaatttttgcttatagcattatggatggat
acttttagggctttatcctgggaaataaccatccattgcgattattcacaagggagctgt
ttgaatgaccactggaaaacatttgaaggtgatttttctggtaagcagtacttggttgca
gtcgaccctgcctcatcagtcattcctgtgactaacaacgatgacaaggttactagttgt
gctgtagtctgccccagtgacttggtttcatcttcacaaaagctgagttctcccgatgag
attggcagcacttgctatgcctatcatatgataactggttgcttcaatggcagcttaaaa
ctgtggaggagcatgccactcgattctttgagctcagataagaagtgggctcttgttggg
gtccttacttctcagcaaggtcctatactaaatgtctctatgagtccctgtggccaaaag
attgcttctgcctccaaaaatagtctatcaaaaaatcattctactacactttgcatatgg
gaatgcttgcatgtcaaaggtgtgggcagcttcatgctggaagataaactttgttttgat
ggggtgattgttgcttttaattggttaaaaatgggaattggtcagctattacttgccgtt
tgttcacaaaatgatttgcggatatatgcttcacgacgccgtgggggtcaaggtgaatta
aaatcagagaagcctatggaagaaaatgcttggatatgcattgcagctaagagtaatcta
cctcctatttctgacttcctttggggccctaagggcacagctgtagtagttcacgacaag
tattttagtattttcagtcactttttgtcgttatctgattacactggctcccatgacatt
gtgcactattcaactttcactgattctgaaaaagcactatcaaaaattggaggcaaatat
gagtcgcagccccctgcaaagatgaaaaacaatgttgagagcttccagtggtacagttat
gccaccgaaaaatgtttctggagcatgtcagaaatagccgaaaagataggaggatctttg
cctctatttcacccagaggccctttttaataacttgtgctcaggtaactggaaacgtgcg
tttatagctctacgccatcttgctaaacatcttgcttctggcactttgtctgaacaaggt
catggtgctaaaatgcctagcagtttagtttcaccagttcccttgtcagattatcttgat
gggattcttccacttcattcaagtggtaacgtatttcattggagtacatcccaacttcac
acgggtttatttaactctgtcccggagggtggttatggtgctcataattccaccatgact
tcatcgctgtccaaatctgaatttgatggcttcattgaatctcttgagagtttgcattct
tataattgcataaatacagacgaaaagatacaggccattgcacttgttgatcttctacga
gaagttggtaatgctaactcaacttctgcttatggaagtctagatgaacctggtcggaga
ttctgggttgcagtgaggttccagcaactatattttgctcaaagatatagtaggttgcct
ctggtggaagagtttgttgtctctccaggactcattgggtgggcttttcattcagattgc
catgacaatttgtttaattcgttactaccaacagagccatcttgggaagaaatgcgcagt
atgggtgttgggttctggtatacaaatgtatcgcagttgagggttaagatggaaaagctg
gctagacaacagtatatgaagaagaaagatcctaaggcctgtttactcctttatattgtg
ttaaacaggcttcaagttttggctggcctcttcaaaataagcaaagatgaaaaggataaa
ccattagcgggatttctctttagaaactttcaggaagataaacataaggctgcagctatt
aaaaatgcttatgtactattgggaaaacatcaactggagctagcagtagctttctttttg
ctcggaggagatgcttcttctgctgtgacagtctgtgccaagaaccttggagatgaacag
cttgctcttgtaatatgtcgtctcatagagggatgtggtggacctttagaatgcaatctc
attgtaaagtttctcctcccatctgcactatcaaaaggcgacttctggatggcaagtttt
ctagagtggctattgggaaattatccccaatcgtttttcagaatgcttggtgctgaagtg
ggttcggaggtcaatatttctgtcctttcatcctctcatacctgttttctggatccaagt
attggtcaatattgcctgatgttggcaaacaaaactaaattgaaaaatgctgttggggag
cttaatgctgctaatctctgtcggtgggcatctctgatgaatattacttccttccgaaga
tgtgggctacctcttgaagcgttggagagccttttgtcatctgtgagcatatttggtggc
cctacccatgggagcttgacgcataacccaactggtgatcttcctgctgaattgacacaa
ccatctgtgtatgagaactcctcaaactggatgttggaagagacatctttccatattata
tcgtattgtaagttatatttagcattgcagtacatgtcaaccttgatgaaagaacatcca
agctctttagaaaatgataggccatcttctttcaaagaggctataaacctggaggttgac
cgtcaggactttgagaaattactgaaggaatttgaagacaagttgacagaagctattaca
tatttccagcaaaaattcctcttggttcctctccatctaattaaaatgattgtattgtct
ttgtgccataatggtctagactttattggacactacatattacaagattatgctccaaag
ttcctgtcgcaagaaaagagtaatcgccctgatgatttgttttgttctccatccaatctg
tttaaagctactgaagaaatgttatcactgtatgtgaaatatattgttgcctcttgcaaa
aactgcttgagatcaacatatttttccgtggatagtctttctagtgaaggcaggttatgc
tggcttactgtgtggggtttgtcagatcagggcatgacagagacatttatgtgtctaaga
gctatgttgcagctgttcctaagatcccaagctgtagattttcagaagttacttttattt
gttgtcagtttgtttgaattccatatactttttgctacagcttggcttcaaaagaatttc
aaagctattattgtatctattggacctattctgtctaatttactggacgaaagtggctct
aatgggttgaagatggagaatctgaataaacttattagtgaggttatggagttgctagct
catggtttagtgtatgttgagtcaggacaaaagcaggaaccaagcggagcagtttctgat
aacaaggcctggcatatcatcagttcttctttttgggtgtgcatgtctaaattcttggaa
catcaactcagtacattgcctgaagtacctgaagattttttttcttctgggcctccccct
gtattagaacttgatggaaataatctacagcaacaagccagattgacctctagcactttg
gttcagtttctcaagctcacgtgctcagatatttcgttttattgttcaaagcaatttgca
acgtacctacttcaagaagcaaatactttgaacaaaaataacctttcatcctttgaaaat
ggtctgtatcaatcaggaggggagaatattaatccaatgattgaatatccaaaaccatta
gaccacggcaatgagttgccagatcttgataagttaaggaatatttttgctggttccgaa
atccttcgtggaacctttgagaaagagtatcacaattggctaccatacattaagcaaaag
tcatctagtggatggagttatgcatatgcaagcatcacagcagagttcggattagaggaa
aattgggataaagaagatggatttggtagtcctcgtgcaattggatcacctttagcatgt
acaaccccagatcatccttttaaaacttctgatgataataatacatgtgactcaaagagg
gtgatgcctttccaaaatcctaaagaaatatgtagaagaaatggagaacttttggaggct
ctgtgcataaactccatcgatcaatcccaggctacacttgctagcaataagaaggggata
gtatatttcaactgggaggatgggattcctgataggtataaagctgaatgtatttgggga
gaagcagactggccgcacaatgggtgggcaggatacgagtccactccagttcctacaaat
ggttcttctgctgtgggctttggaagtaagaaggccacacaccttgggttgggaggggcc
acaattggtgcaggctccttggtgcaaccaggaggagaattaactggtgggggagccttt
ggcattccaggatatgctggtatgggagcatccagccttgattgggatctacaagaaagt
tttgatgagttccttgatccacctgcaacaattgatagtgtaaggacaagcgcatttgca
tcacatccatgcaggcctttcttcttggttggttccagcaatactcgcatatacctttgg
gagtttgggaagggcacagctactgcaacctatggagtacttccggctgcaaatgtacct
acaccttatgctcttgccactgtgtctgctgcgcgttttgaccactgtggacacagattt
gtgactgccgcattagatggaactgtatgcacgtggcagcttgaagtgggaggaagaagt
aacattcatcctacagaatcttctgtctgctttaacaatcatactgcggatgttacttat
gttacggcaagtggatcaattgtggctgcagcaggatacagctccaatggggtgaatgtt
gttgtatgggacacacttgctcctccagctacttctcaagcttcaataatgtgtcatgaa
ggaggtgctcgatcccttgccgttttcgataatgacatagggagtggttctgtctctcct
ctcattttaactggtggaaaaggtggtgatgttgggcttcacgacttccgttacatagct
acaggaaggactaagaaacacaagcacttggatcctggggaacataatatgaatgcttca
tcttctgttgatatgcgtagcaaaactggtgaccaaaataggaatggtatgctttggtac
ataccaaaggcccactcagggagtatcaccaaaatttctacaattccaaataccagtttc
ttcttgactgggagtaaggatggggatgtgaagctttgggatgcgaagagggccaagtta
gtatttcactggccaaaattgcatgaaaggcacaccttcttgcaacctagctctcgtgga
tttggtggagttgttcgggctgcagtcacagacattcaggttgtttctaatggcttcctt
acatgtggaggagatggtattgtaaaatacatcggatttcaaggcaatccactggagaca
acaaattaa
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integrated database retrieval system
