KEGG   Salvia hispanica (chia): 125186201
Entry
125186201         CDS       T09851                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI2
  KO
K10752  histone-binding protein RBBP4
Organism
shis  Salvia hispanica (chia)
Pathway
shis03082  ATP-dependent chromatin remodeling
shis03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125186201
   03083 Polycomb repressive complex
    125186201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:shis03036]
    125186201
Chromosome and associated proteins [BR:shis03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     125186201
  Histone modification proteins
   HAT complexes
    HATB complex
     125186201
   HDAC complexes
    Sin3A-HDAC complex
     125186201
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     125186201
    PRC2.2
     125186201
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     125186201
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125186201
  Chromatin remodeling factors
   NuRD complex
    125186201
   NuRF complex
    125186201
   NuRF complex (fruit fly)
    125186201
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz CAF1C_H4-bd Beta-prop_CAF1B_HIR1 WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I WD_LRWD1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_HPS5 Beta-prop_EML ANAPC4_WD40 MIOS_WD40 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_RIG_1st Beta-prop_DCAF4 DUF6922 WD40_MABP1-WDR62_1st
Other DBs
NCBI-GeneID: 125186201
NCBI-ProteinID: XP_047938504
LinkDB
Position
5:complement(10469178..10472099)
AA seq 392 aa
MAEEAMVEEEFSVWKKNTPLLYDLVVCHSLEWPSLTVQWLPTPPSSDSGDLAAHKLILGT
HTSDDCPNFLMLADAFLPRDPTSAIDVDPENSIVPRVDIVQKIRVDGEVNRSRCMLQNPA
LIAAKTNIPEIFVFDTTKQLEDANVDCCNPDLRLRGHDKEGYGLSWSSFREGYLLSGSND
CKICLWDVSATPQEKVLDAKFTYEGHENVVEDVSWHLKNENLFGSVGDDGKLVIWDLRTN
KFQHSVVVHEKEVNYLSFNPFNEWVLATASSDSTVGLFDMRNLNAPLHALSSHEKEVFQV
EWDPNHETILASAADDRRLMVWDLNRIGDEQLEGEAEDGPPELLFSHGGHKAKISDFSWN
KNQPWVISSVAEDNTLQVWQMAESIYRDDDFP
NT seq 1179 nt   +upstreamnt  +downstreamnt
atggcagaggaggcgatggtggaggaggagttttcggtgtggaagaagaacacgccgttg
ctgtatgacctcgttgtatgccactccctcgaatggccgtcactcaccgtccagtggctg
cccacgccgccttcatctgactccggcgatctcgccgcgcacaaattgatcctcgggacg
catacatccgatgattgccccaatttcctcatgctcgccgacgccttcctcccacgcgac
cccacctccgccatcgatgtcgaccccgagaactcaatcgtccctagggtggacatagtt
caaaaaattcgagttgatggagaagtgaataggtcgcggtgtatgttgcagaacccggct
ttgatcgctgcaaagaccaatattcctgaaatattcgtgttcgacactactaagcagctg
gaggatgccaatgttgattgttgcaatccggacttgagacttcggggacatgataaagaa
ggatatggtttgtcgtggagctccttcagagaaggatatctattgagtggttcgaatgat
tgcaaaatttgtctgtgggatgtgtctgcaacgcctcaagagaaagtgcttgatgcaaag
tttacttatgagggccatgagaatgtggttgaggatgtatcgtggcatttaaagaatgag
aacttgttcggctctgtgggggatgacggcaaactagtgatttgggacttgcgcacgaac
aagttccagcactctgttgttgtacatgagaaagaggtgaattatttatctttcaatcca
tttaatgagtgggttttggcaactgcgtcctctgattctacagttggtctatttgatatg
cggaacttgaatgctcctctgcatgctctaagcagtcatgagaaagaggtattccaggtt
gaatgggatcctaaccacgaaacgattcttgcatctgctgctgatgacagaaggttgatg
gtttgggaccttaacaggattggagacgagcaactagaaggagaagctgaagatggtcct
cctgagctcctcttctcccatggtggtcataaagcaaagatttcagacttttcatggaac
aagaatcaaccatgggtcatctcgagcgtagcagaggacaacacactgcaggtctggcaa
atggcagaaagcatctaccgtgacgatgattttccgtag

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