Salvia hispanica (chia): 125186204
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Entry
125186204 CDS
T09851
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125186204
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
Other 90S particles
125186204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
125186204
NCBI-ProteinID:
XP_047938509
LinkDB
All DBs
Position
5:complement(11088898..11103738)
Genome browser
AA seq
1889 aa
AA seq
DB search
MAPPAKKFNSKPSSERPRGRPIASSQLPLQLEDDAPDFPRGGTLLTREERNEAREGVEKD
FETEIRVLKKRKKEKRVQNKNNSTEDDLGLLFGDGITGKLPRFANKITLKNVSSGMKLWG
VIAEVNEKDIIVSLPGGLRGLVRASDAFDPISSDEVNGDVDNSFLSRIYQKGQLVSCVVL
QVDDDKKELAKRKIWLSLRLSALHKSLNLDSIQEGMVLSAYVKSIEDHGFMLHFGLPSFT
GFMPKQNQSEGRNLNVGIGQLLQGIVKSVDRSRKVVHMSSDMDVVSKYVTKELKGISIDL
LVPGMMVNARVQSTLENGILLSFLTYFTGTVDIFNLDKTFPSSKWKNDYAKNIKFNARIL
FIDPSTRAVGLTLSPQLVSNKASTSLVKVGDIFEHCKVVRVDKGSGLLLEVPTEPFPTPA
YVNVNDVADKEVKLDKIFKEGSSARARILGYRHLEGLATATLKTSAFEGSVFTHSDVKPG
MVVKAKVIAVDSFGAIVQLASGVKALCPLRHMSEFEITKPRKKFEVGTELVFRVLGCKSK
RITVTHKKTLVKSKLEILSSYADGSDGLVTHGWITKIEKHGCFVRFYNGVQGFAPRSELG
LGPGSDIHSMYHVEQVVKCRVVKCLPASHRINLSFNITPTRGSEGELIKPGSLVSGVVES
VATKTIVVAVHESSRMKGTVVLEHLADHHGLATLLMSVMKPGYHFDKLLVLDVEGNNLIL
TAKHSLVNSIEQLPAEISQISCHSVVHGYICNIIDAGCFVRFMGRLTGFAPKSKVTDDRR
SDLSEVFFVGQSVRSNIVDISSDTGRITLSLKQSLCSSTDASFIQEYFLLEEKISELQVS
DTQGPPLKWTNGFGICSVIEGTVHEIKDFGVVISFQEYSDVFGFISHYHLAETTLEKHSV
VRAAVLDVSRIERLVDLSLKPELINKTKEESSASKTLKKKRKREAHKELEDNQVVNAIVE
IVKENYLVLSLPAYNYSIGYASLTDYNTQRFPITQFSHGQSVTATVMALPGPSTGGRLLL
LLKSLSDGMETSSSKRAKKSSYDVGSLVQAEISETKPLELRVKFGSGCNGRIHITEATDD
NSAENPFREYRVGQKLTARIVSKGNRTESNRGYHGWDLSVKPSLLKGDTEMSKSLSSEDI
NFSYGQRVYGFVYKIDPEWAWLTVSREVMAQLYILDSSSEPCELEDFQKKFYVGKAVSGF
VINVNKEKKLLRVVLHAPPASGELKEADSDRHSLSHLVQGSVVGGRISKILPGVGGLLVQ
IDQHHYGKVHFTELTDAWVSNPLSGYQEGQFVKCRVLEINHAFKGSVHVDLSLRSAQDAS
GHTSTRRVDTITDLHPDMAVHGYVKNVSKKGCFIMLSRNIDARILISNLSDDFIENPEKD
FSIGQLVTGKVLSVEPLSKRAEVTLRTSNAADAPKSNANYLNQILVGDIIHGKVKRVESY
GLFISIDQTNVVGLCHVSELSDDHVDDLPAKFKAGEIVTAKVLKVDKERNRVSLGMKNSY
IAGEEGSTTPSRQGIDVTVGMNGSVTTSEPSLSQSSSEDMENGSDVDHIPLLADAESRAL
VPPLEVQLDDIESLDIQGDISESVVDVTDGNEEKTDKKTKKKAREEREREIRAAEERLLE
KDIPRSAEEFEKLIRSSPNSSFLWIKYMAFMLSLADIEKARSIAERALRTINIREESEKL
NIWVAYFNLENEYGNPPEEAVQKIFERALQYCDPKKVNLALLGMYERTEQHKLADDLLNK
MSRKFKHSCKVWLRKIQSLVKRNGDGVQSVVERGLKSLPRHKHIKFITQTAILEFKCGVP
DRGRSLFEKMLREYPKRTDLWSVYLDQEIRVGDADLIRALFERAISLSLPPKKMKFLFNK
YLQYEKSTGDEQRVESVKAKAMEYVATLD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcctgcgaagaaatttaactcgaaacctagctcggaaagacctcgtggccgc
cccattgcttcgtcacagttgcctcttcagctcgaagacgatgctcccgacttcccaaga
ggagggactttgcttactagggaagagagaaatgaggctagggaaggagtggagaaggac
tttgagacagagattagagtcctgaagaaaagaaagaaggaaaaaagggtgcaaaataag
aataattcgacagaggatgatctagggttgctatttggagatggaattacagggaaattg
ccaaggtttgctaataaaatcactttaaagaatgtgtcatcgggaatgaaactatggggc
gtaattgctgaagttaatgagaaagatatcatagttagccttcctggaggcttgagggga
ctggttcgtgcaagtgatgcatttgatcccatttccagtgatgaagtcaatggggatgtg
gataatagcttcctttctcgaatttaccagaaagggcagcttgtatcttgtgtggttttg
caagtggatgatgataagaaagaattagcaaagagaaagatctggctttctctgcgacta
tctgcattgcacaaaagcttaaatctggactctattcaagaaggaatggtgctaagtgca
tatgtgaagagcatagaggatcatggttttatgcttcactttgggttgccctcttttact
ggatttatgccaaagcaaaatcaatctgagggaagaaaccttaatgtaggcataggccag
cttttacaagggattgttaaaagtgtggacagatctcgaaaggtagtccatatgagttct
gatatggatgtggtatcaaaatatgtgaccaaagagcttaagggtatttcaatcgatctt
cttgttccgggcatgatggttaatgctcgtgtgcaatcaactctcgaaaacggcattttg
ctatcctttcttacatacttcactggaactgttgatatatttaatctagacaaaactttt
ccatcttcaaaatggaagaatgattatgctaaaaatattaagtttaatgctcgcatcttg
tttatcgacccttcaactagagctgttggtttgacattgagtcctcaacttgtcagtaat
aaagcttcaacatctctagttaaggttggagacatctttgaacattgcaaagtagtccgg
gttgataaagggtcaggccttcttctcgaagttcctactgaaccatttccgacccctgct
tatgtcaatgtaaatgatgtagctgataaggaagttaaattggataagatctttaaggaa
ggtagctctgcccgtgccaggatactaggatataggcacttggaagggcttgcaactgct
actctaaagactagtgcatttgaaggctcagttttcactcactctgatgtgaagccggga
atggttgtaaaagctaaagttattgcagtcgacagttttggtgctattgttcaacttgct
agtggtgtgaaagcactatgtcccctccgccatatgtcagagtttgagattacaaagccc
aggaaaaagtttgaggtcggaaccgagttagtttttcgtgttctcggttgcaagtccaag
agaataacagttacacacaagaaaactcttgtgaaatcgaagcttgagatccttagttct
tatgcggatgggagtgatgggttagtcactcatgggtggattacaaagatcgagaagcat
ggatgcttcgttcggttctacaacggggttcaaggatttgcccctagatctgaacttggt
ttgggtcctggcagtgacatacattctatgtatcatgtcgaacaagttgtcaaatgtaga
gttgtcaagtgtcttcctgcttcgcaccggataaatctcagtttcaacatcacacccaca
agggggtcggagggtgaactaatcaaaccaggcagtctagtctctggagttgttgagagt
gtagcaaccaaaacaatagtagtggctgtccatgaatcaagtcgcatgaaaggcaccgta
gttcttgagcatttggcagaccaccatggtcttgccactttgttgatgtctgttatgaag
ccaggataccactttgataaactcttggttcttgatgttgaaggaaacaatctgatactc
acagcgaagcattctctggttaactcaatcgagcagcttcctgctgaaattagccaaatt
agctgccattctgtggttcatggttacatatgcaatataattgacgctggttgcttcgtt
cgctttatgggacggttaactggatttgctcccaaaagcaaggttactgatgacaggaga
tcagatctttctgaagtcttctttgttgggcagtctgtacgaagcaacattgtggatatt
tccagtgatacgggtagaataacactatcactgaagcagtctttgtgttcttcaactgat
gcatctttcatacaagaatactttcttttggaagagaagatttcggagctacaagtatca
gacactcagggccctccgctgaaatggaccaatggatttggtatttgcagtgtcattgaa
ggaacagtacatgaaattaaagattttggtgttgttatcagcttccaggaatatagtgat
gtctttggctttatctcacattatcacttggctgaaaccactttggaaaagcactctgtt
gttcgagctgcagttcttgatgtttccaggattgaacgccttgtagatttatcattaaag
ccagagctcataaataaaacaaaggaagagagttctgcttcaaaaacgcttaaaaagaag
cgcaaaagagaagcccataaggagttggaggataatcaagtggttaatgcaattgttgag
attgtaaaggaaaattatttggttctctctcttccagcatataattactcgataggttat
gcatcattgacagattacaatacccagagatttccgattacacagttttcccatggacag
agtgtcacggccactgtaatggctcttccaggtccgtcaactggagggagattgctactg
cttctcaagtcattgagtgatggcatggagacatccagttctaagcgtgcaaagaagtct
agttatgatgttggatctcttgttcaagcagagatttctgaaacaaagcctcttgaactt
cgagtaaaattcggttctggatgtaatggaagaatacatataactgaggcaacggatgat
aactctgctgaaaatcccttcagggaatatagagttggtcaaaaactgactgcaaggata
gtttcgaagggtaataggacagagagtaataggggatatcatggatgggatttgtcagtc
aagccatctttacttaaaggagatactgaaatgagtaaatcattatcttctgaagacata
aacttttcctacggacaacgtgtttatggttttgtgtataagatcgaccctgagtgggcc
tggctgactgtttctagagaggttatggcgcagctgtatattcttgactcttcaagtgaa
ccctgtgaacttgaggattttcagaagaaattttatgtgggcaaagctgtttcaggattc
gtaataaatgtgaataaggagaagaagttacttcgtgtagtcttgcatgcaccacctgct
tctggggaactcaaagaagctgattctgatcgtcattcattaagccatttagttcaagga
agtgttgtaggtggcaggatttctaaaatccttcccggtgttggaggattgctggtccaa
attgatcagcaccattatggcaaagttcattttactgaactgactgacgcatgggtctca
aatccactttctggttatcaggaaggacaatttgtgaaatgtagagtcttggaaattaac
catgctttcaaggggagtgtccatgttgacttatccctccgttcagcacaagatgcttca
gggcatacttctactcgacgtgtggacacaataacagaccttcatcctgatatggcagta
catggttatgttaaaaacgtgtccaaaaaaggatgttttattatgctttcacggaatatt
gatgccagaatcctcatttcaaatttgtcagacgactttattgaaaatcctgagaaggat
ttctcgattggacaacttgtgactggaaaggtactttcggtggagccattatcaaagcgt
gctgaagttacccttcggacttcaaatgctgccgacgctccaaagtccaatgctaattac
ttaaaccaaattttggtgggagatataatccatggaaaagtcaagcgggttgagtcttat
gggctgtttatatccatagatcagacaaatgttgttggtctgtgccatgtttcagagctt
tctgatgatcatgtcgatgatctaccagcaaagtttaaagcaggagagatagtgacagca
aaagttctgaaggtggataaagagagaaatcgagtttccttgggaatgaagaactcatat
atagcaggggaggaaggttctacgacaccttcaagacaaggcattgatgttaccgttggc
atgaatggttcggttacaacatctgagccatcactatcccagagcagctcagaggacatg
gaaaatggatctgatgttgatcatatacctctactagctgatgcagaatccagggctctt
gtgccaccacttgaggtccaactggatgatatagaaagcctagatattcaaggtgatatt
agtgaaagtgtagtggatgttacagatggcaatgaagagaaaaccgataagaaaacaaaa
aagaaagctagagaagaaagggaacgagaaataagagctgctgaagagaggcttctagag
aaagatatcccgaggagtgctgaagaatttgagaaacttattcggagttctccaaatagc
agctttttatggataaagtatatggcatttatgctttctttggcagatattgagaaggca
cggtcaattgctgaaagggcattgagaacaataaatatccgagaagagtctgagaagctg
aatatctgggttgcttacttcaacttagaaaatgagtacggcaatcctccagaggaggct
gttcaaaaaatatttgagagagcattgcagtactgtgacccaaaaaaggtgaatcttgcg
cttctaggcatgtatgagagaacggaacaacataaattggctgatgatcttcttaacaag
atgagtagaaagttcaagcattcgtgcaaggtgtggttgagaaagattcagtctcttgtg
aagagaaatggtgatggggttcagtcggtggtggaacggggtctgaagagcctcccccgt
cacaagcacataaaattcataacgcagacagccatccttgagttcaaatgtggggttcca
gacagaggaagatccttgttcgagaagatgctgagggagtatcccaagagaacagattta
tggagcgtgtacctcgatcaagagatccgggttggtgatgcagatttgatccgtgcacta
tttgagagagcaataagtttgagccttcccccaaagaagatgaagttcttgttcaacaag
tatctccagtacgagaagtccaccggtgacgaacaacgcgttgaatctgtcaaggccaag
gctatggaatatgtagccactcttgattga
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integrated database retrieval system
