Salvia hispanica (chia): 125186366
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Entry
125186366 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125186366 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125186366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125186366
03019 Messenger RNA biogenesis [BR:
shis03019
]
125186366
04121 Ubiquitin system [BR:
shis04121
]
125186366
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125186366
Transcription factors [BR:
shis03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125186366
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125186366
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125186366
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125186366
BRITE hierarchy
Motif
Pfam:
zf-RING_4
RRM_1
Motif
Other DBs
NCBI-GeneID:
125186366
NCBI-ProteinID:
XP_047938674
LinkDB
All DBs
Position
5:24092593..24101113
Genome browser
AA seq
1022 aa
AA seq
DB search
MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYECICSNANPVPSMHWTTICVWCWHHIMDMA
EKDETEGRCPACRTAYNKEKIVGTTAKCERLVSEMSVEKKVKSQKGKSKGLEGRKQLGSV
RVIQRNLVYVVGLPLNFADDDLLQRREYFGQYGKVLKVSISRTATGTIQQFANSTCSVYI
TYSKEEEAVRCIQLVHGFALDGKPLRACFGTTKYCHAWLRNMPCSNPDCLYLHDIGSQDD
SFTKDEVISEHTRSRIQQVTSSSISIQRRSGNVLPPPGDDYCNNNSSTSSVKPLAKTAIN
TNNSVTSSRNSPPSSSSGISAALPAGASWGVRPSGNQPLLTSTSSSSRPSNQKNDMCNGP
AAFSKSAPSQVSSLHNDTGKKRVPNEGSTISLEKNKTETSGPVKKEANTDGSIVSDTSST
PAYITSVPLSSQLHSPPRTRSLLNTSNIVDSSASSNGLVSDKDLKDYIDNNMENVCSDVL
SLSIQENQHSQNNNVEKIRESSVCETSGEDKSTTDVVHIANVQSDSRLGRPDEETKIDLP
ELDNDLLSFHSQRIKDPEIASSRTPEFFDALNLKRSDFISPAFDNANGLTGIGFNSQAVH
RSGNLMVSSSNSPSVYLENTFSNGAENSNLSLRKEKMSQLARYETEVGSGVPAIDTGESS
IISNILSLDFDSWDESVSSPQNLAKLIGETDRRQGSFGAPGSWKTQNSSQSRFSFAREEE
AMSHFPEQSIDYHEQALKQHLFGHNFAGSNRFNVEKFVSTNGLPFSSGTEQDYFANNVSH
YSSNKLPISRPHVSAPPGFSAPSRAAAPPGFTSHARTEQFFESHSGHAVEATSLLRNQYQ
TPPSGDTYSNGDIEFMDPAILAVGKGTFASGIDNMGLDIRSNFSPQFNAYDEARFQSILQ
RSFPPHHNQRFSDLGDNLSTLGDTHGIPSRVAEQTLTNNHSPFSQFNLQQYRNGATSNGQ
WDGWNESQSMNNLSIDELLRAERLRLSSNLYGGYEESKMRMPGWWRIKSSHMESRSQQVR
VL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaaggagagaagacttgccccctctgtgctgaggagatggatttaactgat
cagcagttgaagccttgcaagtgtggctatgagtgtatctgttcaaatgcgaatcctgta
ccatctatgcactggacaacaatttgtgtttggtgttggcatcatattatggatatggct
gagaaagatgagactgaagggcgctgtccagcatgtcgtactgcttataacaaagaaaag
attgttggaaccactgcaaaatgtgaaagattggtgtcagagatgagtgtggagaaaaag
gtaaagtcacagaagggaaagagcaaaggcttggaaggacggaagcaacttggcagtgta
cgagtcattcagaggaatcttgtgtatgttgtgggtctgccactgaattttgccgatgat
gatctacttcagcgccgagaatattttggtcagtatgggaaggtgctgaaggtgtcaata
tctcgaacagcgactgggactatacaacagtttgcaaatagtacatgcagtgtatatata
acatattcaaaggaggaggaggcagtccgatgtattcagttggtacatggatttgctctg
gatggtaaaccattgagggcatgctttgggaccacaaaatactgtcatgcatggctgaga
aatatgccttgcagcaacccagattgtctgtatttgcatgacattggctcacaagacgat
agttttacgaaggatgaagtcatatctgaacacacaaggagtagaatccaacaagtcacc
agttcctcaattagtatccaacggcgttcaggaaacgtattacctcctccaggagatgat
tactgcaataataacagctcgacgtcttcggtgaagcctcttgctaaaactgctattaat
acaaataattcagtaacgagttctagaaattctccaccaagtagtagctcagggatatct
gctgctctaccagctggagcatcatggggtgtacgtccatctggtaatcaacctttgctg
acaagcacatcgagttccagcagaccatctaatcagaaaaatgacatgtgtaatggtcca
gcagcattttctaaatcagccccaagtcaagtttcttcgcttcataatgacactgggaag
aaaagggtgcccaacgaaggaagcaccatttctcttgagaaaaataaaacagaaacttct
gggccagttaaaaaggaagcaaataccgatggaagtattgtttctgacacttcctcgaca
cctgcatacatcaccagtgtgcccttgagcagccagcttcatagcccacctagaacgaga
tcacttctaaatacttctaatatagttgattcttctgcttcatctaacggacttgtatca
gataaagatctgaaggactacatagacaataacatggagaatgtgtgctctgatgtatta
tcattgagcattcaagaaaatcaacattcacaaaacaacaatgttgagaaaattagagaa
tcatcagtttgtgagacttctggagaagataagagtaccactgatgtggtacacattgca
aatgtccagtctgattctagattgggaaggcctgatgaagaaactaaaatcgacttgcct
gaactggacaatgatttgttatcttttcatagccagaggattaaggatcctgagattgct
tcgagtagaacaccagagttttttgatgcacttaatctaaagcgttctgattttatttct
cctgcatttgacaatgctaatggtttaactggtattggttttaatagccaggctgtacat
agaagtggtaacttgatggtatcaagttctaattctccaagtgtgtatctggagaataca
ttcagtaatggtgctgaaaattccaatttgtctctgagaaaagagaaaatgtctcagctt
gcgagatatgaaactgaagtaggcagtggtgtgcctgctattgatacaggggagagcagc
atcatatcaaatattttgtcactggactttgactcatgggatgagtctgtaagttcacct
cagaacctggctaagttgataggtgaaactgacagacggcaggggtcttttggagcacca
ggttcctggaaaactcagaatagcagtcaatcaagattctcatttgctagagaggaggaa
gctatgagccattttcctgaacaatctattgattaccatgaacaagccttgaagcagcat
ctttttggccataatttcgcaggcagcaacagattcaatgttgagaagtttgttagtaca
aatggtttacctttttccagtggcacagagcaggattattttgctaacaacgtttctcat
tattcttccaacaagcttcctatttcaaggcctcatgtatctgcgcctccaggattttcg
gctcctagtagggcagcagcacctccaggctttacttctcatgcacggacagagcaattt
tttgaatcacactctggtcatgcggttgaggctacctctttattaagaaatcagtatcaa
acacccccaagtggtgatacttattctaatggtgatatagaatttatggatcctgctatt
ttggctgttggcaaagggacatttgcaagtggcatcgacaatatgggcctagacataaga
tccaatttttctccacagttcaatgcatatgatgaggccagattccaatcaattttacaa
agatcttttcctccacatcacaaccaaagatttagtgaccttggcgacaatctttcaacc
cttggtgatactcatggaattccatctagggttgccgagcagacactaaccaataatcac
tctccattttctcaattcaaccttcagcagtatagaaatggagcaacttctaatggtcaa
tgggatgggtggaatgaatcccagagtatgaataatttgagtatagatgaactgctcaga
gccgagaggttgagacttagcagcaatttgtacggtggctatgaagaatccaagatgagg
atgccaggttggtggaggatcaaatcttctcatatggagtccagaagccagcaggtgaga
gttctctga
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