Salvia hispanica (chia): 125186451
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Entry
125186451 CDS
T09851
Name
(RefSeq) RNA helicase aquarius
KO
K12874
intron-binding protein aquarius
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125186451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125186451
Spliceosome [BR:
shis03041
]
Complex B
Other components
Prp19-related factors
125186451
Complex C
125186451
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
UvrD_C_2
ResIII
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
125186451
NCBI-ProteinID:
XP_047938774
LinkDB
All DBs
Position
5:complement(33091361..33103610)
Genome browser
AA seq
1510 aa
AA seq
DB search
MTKVYGTGVYDFRRHRVAEYPVDGEAPPVPEKPTESRPLSNVPSSITLSEIQRDRLTRIA
AENWMKTADSAPTKPFSPDLVKEIYSTELTVKGGRKPVPLQRVMILEVSQYLENYLLPNF
NPETASFEHVMSMILMVNEKFRENVAAWICFYDRKDMFKSFLERVLRLKEGRSLTVSEKT
NYLLFMINAFQSLEDEVVSERIMRLASLECWHSLSYGRFQMELCLNENLIKKWRRIAKRA
RDGTKQGGNFDPTTMLEANFLRNLIEEFLEVLDSEVFSSISNEENDPVAHGSEYVNDACV
LYCERFMEFLIDLLSQLPTRRLVRPLVADVAVVAKCHLSSLYSHEKGKLFGQLVDLLQFY
EGFEINDHQGRQMTDDEVLQAHYKRLQAFQLLAFKKVPKIRELALANIGAINKRADLAKK
LSVLSAEELRDLVCAKLKLVSKDDPWSERVDFLIEVMVSFFEKQQSQKEAINALPLYPNE
QIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVP
HLLSYTNNEGETAFRGWSRMGVPIKEFRIRDVKQPKIGEVKPSAVTAEVTFSVSSYKAQI
RSEWNSLKEHDVLFLLSIRHSFEPLSAEEAEKATVPQKLGLQYVRGCEIIEMRDEEGTLM
NDFTGRIKHDEWKPPKGELRTVTVALDTAQYHMDVCDIAEKGADDVYSTFNILMRRKPKE
NNFKAILESIRDLMNETCIVPDWLHDIFLGYGDPSAAQWINRPDLLEKADFKDTFLDAAH
VKDSFPNYQVHFAHSDGTDNSDPCPPFRIKFPKNPDGAVHFQPGNAASTTSSNNSNAMED
DHSDKLELVVESYVPPDPGPYPQDQPKQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGK
TDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMERDVPARYLLRLGQGEQELATD
LDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVAYTCETAGFFWLLHVYSRWELFLA
ACADNKDKPTFIQDRFPFKEFFIDTPNPIFSGQSFEKDMRAAKGCFRHLKTMFQELEECR
AFELLKSTVDRSNYLMTKQAKIVAMTCTHAALKRKDFLNLGFKYDNLLMEESAQILEIET
FIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIE
LNAQGRARPSLAQLYNWRYKDLGDLPYVRENHIFRRANAGFSFDYQLVDVPDYHGRGESA
PSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVISRRCVPYDFIG
PPHKVTTVDKFQGQQNDFVLLSLVRTRFVGHLRDVRRLIVAMSRARLGLYVFCRRTLFEQ
CYELQPTFQLLLQRPDHLGLNLQEFTAFTDRDVDDTGSVQLISGPDEMADLVNYRMHEVY
QSRVVSYHLNESWSEHDNSVENGTANPNTSTGTDDVEMQASANGDDVEMQATVNVDVMDM
PPDGKPNDST
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagtatacggcaccggtgtctacgatttccggcgacaccgggtggctgaatac
ccggttgacggggaggcgccccctgtgccggaaaagccaactgaatccagaccactatcc
aatgtgcccagctctattaccctaagcgagattcagagagaccgtctcaccagaattgca
gccgaaaattggatgaaaaccgcagattccgccccaacaaagcccttcagcccggacctt
gtcaaagaaatttactccacggagttgaccgttaaaggggggagaaagccagtgccgctg
cagagggtaatgatactggaagtgagccagtacttagagaattacctattgccaaacttc
aatccagagactgcttcatttgagcatgtgatgtcaatgatactcatggtcaatgagaag
ttccgggagaacgtcgctgcatggatatgcttttatgacaggaaggatatgtttaaatca
tttcttgagagggtactccgtcttaaggagggaagaagcctgactgtttcagaaaagacg
aattatctactcttcatgatcaatgcctttcagagcttggaggatgaagtagtgagtgaa
aggattatgcgattagcgagcctggagtgctggcatagcctatcgtatggacgttttcag
atggaactttgccttaatgaaaatctgataaaaaagtggagaagaattgcaaaacgagca
agggatggaactaaacaaggggggaattttgatcccacaaccatgttggaagcgaacttt
ttgagaaatctcattgaggaatttttggaggtgcttgattctgaggttttctcttccatt
tccaatgaggaaaatgatcctgttgctcatggttctgagtatgtgaatgatgcctgtgtc
ctctattgtgaaaggtttatggaattccttattgacctcttgagccaactgcctaccagg
agattagtgcgacctcttgttgctgatgttgcagtagttgccaaatgtcatttaagttct
ctgtatagccatgagaaagggaagctttttggacagttggttgacttgctccagttctat
gaaggttttgagattaacgatcatcagggtagacaaatgactgacgatgaggtgcttcaa
gctcattataagcgccttcaggcttttcagctgcttgcgtttaaaaaagttccgaagata
cgagaacttgcattggctaacattggtgcaatcaacaagcgtgctgaccttgccaaaaag
ctttcagtactttctgctgaggagttaagggatttagtatgtgctaagctcaaactggta
tcaaaggatgatccttggtcagaaagagttgacttccttatagaagttatggtttcattt
tttgagaaacaacagtcacagaaagaagcgatcaatgctcttccactataccccaatgag
caaataatgtgggatgaaagccttgtaccaagtatcaactactctggtgaagggtgtctg
gcacttccaaagctaaatttacagtttttaacacttcatgattaccttcttagaaatttc
aacctcttccgccttgaatcaacttatgaaatcagagaggatattcaagaagctgtgcca
catcttctctcatataccaataatgaaggagaaactgctttccgtggttggtcaagaatg
ggagtgccgattaaagaattcaggataagagatgtcaagcaaccaaaaattggggaagtg
aagccttctgcagtgacagctgaagttacttttagcgtttcgagctataaagcacaaata
agatctgaatggaattctcttaaggagcatgatgtcctttttttactctctattcggcat
tcgtttgagcctctgagtgccgaagaagcagaaaaggcaactgttccacagaaacttggt
cttcagtatgtgcgcgggtgtgagatcattgaaatgcgtgatgaggagggaactctcatg
aatgatttcaccgggaggatcaagcatgatgaatggaagcctcccaaaggagaactgaga
actgtgactgttgcactagatactgcacagtatcatatggatgtttgtgacatagcagag
aagggtgcagatgatgtatatagcacatttaacatattgatgaggcggaaacctaaggag
aacaactttaaagcaattttggaatccataagggatctgatgaatgaaacatgtattgtt
cccgattggttacatgacatatttttgggttatggtgatccttctgctgcccaatggatc
aataggccagatctccttgaaaaggctgatttcaaagatacgttccttgatgctgctcat
gtcaaagatagctttccgaactatcaggttcactttgcacattcagatggcacggacaat
tctgatccatgtcctccatttcgtattaagttccccaagaatcctgacggcgcagtacat
tttcaacctggaaatgctgcatctacaacatcctcaaacaattccaatgctatggaagat
gatcattctgataaactggaacttgtagttgagtcttatgttcctcctgatccaggacca
tatccccaagatcaaccaaagcagaactctgtcagatttactcctacccaggttggagct
atcatttcaggcattcagcctggtttaactatggtggttggtccacctggtactggaaag
acagatacagctgtgcagattttgaatgttctataccacaattgtccttctcagagaact
ttgataattactcattcaaaccaggctttaaatgatctttttgaaaagataatggagaga
gatgtcccagcccgatatctacttcgacttggtcaaggtgagcaagaattggctactgac
cttgatttcagccgccaaggccgtgtgaatgccatgctcgttcggcggttggaactcctt
agtgaagtggagcgcctggcgaggtctctgcaactgcctgaagatgtagcttatacttgt
gaaacagctggttttttctggttgcttcatgtgtattcgcgctgggaactctttttggct
gcttgtgctgacaataaggataagccaacgtttattcaagaccgttttccttttaaggag
ttctttattgacactccaaatccaattttctcgggccagtcttttgagaaagatatgcgg
gctgctaagggttgcttccgccacctgaaaactatgtttcaggagcttgaagagtgccgg
gcatttgagttactgaagtcaacagttgatagatcaaattatcttatgaccaagcaagca
aaaatagtagccatgacatgcacccatgcagctcttaaaaggaaggattttctgaatttg
ggctttaaatatgataacttgctaatggaagaaagtgctcaaattttggaaatagagact
ttcatcccaatgttactccaaaggcaggaagatggttatgctcgtcttaaacgctgtata
ttgattggtgaccatcaccagctacctcctgttgtgaaaaatatggcttttcagaagtac
agccatatggatcaaagtcttttcacaagatttgtccgtctgggaattccctacattgag
ctcaacgcccagggaagagctagacctagtttagctcaactttacaattggagatataaa
gatcttggagatcttccatatgtgagagagaatcatatcttccgcagggcgaatgctgga
ttctcctttgactatcagttggtggacgttcctgattaccatgggagaggtgagtctgct
ccttctccctggttctatcaaaatgaaggagaggcagagtatgttgttagtgtgtatata
tacatgcgtttgcttgggtatccagccaacaagatatccatactgacaacatacaatggt
cagaaacttttaattcgtgacgtgatcagccgtagatgtgtcccatacgacttcattggt
ccaccccacaaggtaacaactgttgacaagtttcaagggcagcagaatgattttgtctta
ctatctctcgtgcgcactcgttttgtgggtcaccttcgtgatgtaagaagattgatagtg
gcaatgtctcgtgcaagattgggactttatgttttctgccgccgtactcttttcgagcag
tgctatgagctccaaccaacatttcaacttctgcttcagaggcctgaccatcttggtctg
aatttacaagagtttacagcatttacagatcgtgatgttgatgacacaggatctgtccaa
cttattagtggaccggatgagatggctgacttggtgaattacaggatgcatgaggtctac
cagtcacgggttgtgagctatcatttgaatgagtcttggtctgaacatgataattctgta
gaaaatggcactgcaaatccaaacacctctactggtacagacgatgttgagatgcaagcc
tcagctaatggtgatgatgtagaaatgcaggccacagtgaatgttgatgtcatggatatg
ccacccgacggtaagccaaatgattcaacctga
DBGET
integrated database retrieval system
