Salvia hispanica (chia): 125186920
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Entry
125186920 CDS
T09851
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125186920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125186920
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125186920
mRNA degradation factors
5'-3' decay
Decapping complex
125186920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
DUF445
Motif
Other DBs
NCBI-GeneID:
125186920
NCBI-ProteinID:
XP_047939365
LinkDB
All DBs
Position
5:complement(19139060..19148884)
Genome browser
AA seq
1392 aa
AA seq
DB search
MASPIDMHKLFKPSTPPPQQQHPNSNPNPPQSFPNNVANTNSNPNLASAPFPVPSASYPP
PTGAGSGPYSYSPQTPPYHYHPVYTPYSNPPPHQDFANVHPQRSMSYPTPPLQPQPQSPN
SNFQNPQNPSNPGARLMALLSAPPSTLEVPQPMAQIHPSSSSASDFSMPQGPVTRMPSSK
LPKGRHLIGNHLVYDVDVRLPGEVQPQLEVTPITKYGSDPGLVLGRQIAVNKTYICYGLK
LGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYVWKITEGSDEEDK
PQITGKIVIALQITGEGDSLHPRVCWHCHKQEVLVVGIGRRVLKIDTTKVGKGEKYSAEE
PLKCPIEKLIDGVQLVGSHDGEITDLSMCQWMTSRLVSASVDGTIKIWEDRKSTPIAVLR
PHEGQPVNSVTFVAAPHRPDHIILITGGPLNRELKIWVSASEEGWLLPSDAESWHCTQTL
ELRNSEGRLEEGFFNQVAALSQAGLLLLANAKRNAIYAVHMEYGPNPAASRFDYIAEFTV
TMPILSFTGTSEVRPHGEQIVQVYCVQTQAIQQYALDLSQCLPPPTENVVYEKTDTSVSR
DAGSIEGIASVEPSGSKPAEISISSTAPKASVHESSFDNASAVRYAVGAVSGESPVTQEF
ATSSMESKQVNLSRAANDTDISLATSTPLPLSPRVSRTLSGFSRSSSIEHGSPGSEQKVI
EYSVDRPIDGVHGNLPAVTSLGDDSQDDISAAPNHPIKFKHPTHLVTPAEILMATSSSDV
NHTIEPQSEGDHNIQDVVVSNDTRNVEVEVKVVGETNFSPSNDIGPREELEAFVPENRDK
IFCSQASDLGMGMARECRALSPEIYAVEEARQVSGTAGTEADTRSSTIVEEEGHDSVKDV
IQRDDDSSTPLPAQPTAPTTKGKKQKGKNVQGSGQSSQSPSESSSTDYPVEPGVSSSTPQ
QETGVSQMLPMQEMLNQIVSMQNEMHKQMAMMVAVPVTKEGKRLEAALGRSMEKAVKANS
DALWARLQEENAKQERAAKERMQQLTNTISNCLNKDLPAIVEKTVKRELTTVGQSVARTI
TPAIEKIISTSITESFQKGVGDKAVNLLEKSISSKLETVVARQIQVQFQTSGKQALQDTL
KSSLEVSVIPAFEMSCRTMFEQVDTAFQKGMVEHTSVAQQQFEASHSPLALALRDAINSA
SSMTQTLSNELLDGQRKLLAIAVSGANSKAPNLLSQLSNGPLGSLHEKLEVPPDPTKELS
RLMAERKYEEAFTAALQMSDVNTVSWLCSQVDLPGILSVNPLPLSQGVLLSLLQQLACDI
SKDTPRKLTWMREVMTAINPTDPMIAVHVRPIFEQVYQILNHQRNLPAMGGTELANIRLI
MHVINSMLMSSK
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaccaatcgatatgcataaattgttcaagccctctaccccgccgccacagcag
cagcatcccaattccaaccctaatccgcctcagagcttccccaataacgttgccaatact
aattctaaccctaatttggcctccgcccctttcccggtcccatcggcctcgtatccgccg
cccaccggcgccggaagtgggccctactcttattccccccagacgcctccgtaccattac
cacccggtctacaccccctactccaacccccctccacatcaggactttgctaatgtgcac
cctcagaggtccatgtcttatcccaccccgccgctccaaccccaaccgcagtcccctaat
agtaatttccaaaacccccaaaaccctagcaatccaggtgctcgtttgatggcgttgctg
agcgcgccgccatctaccttagaggttccgcagccaatggctcaaatccacccctcttcc
tcctcggcctccgatttttcgatgccacagggccctgtaacgcggatgccgagtagtaag
ctgcccaaggggaggcatttgatcggaaatcatttggtttacgacgtagatgttagattg
cctggagaagtgcagcctcagcttgaggtcacacccatcactaaatatgggtcggatcct
gggcttgttttggggaggcaaattgcggttaataagacttatatctgttatggtctgaag
ttgggggccatccgggtgctcaatattaacactgctttgagatccttgcttaagggtcta
gcgcagagagtcacagacatggcttttttcgcagaggatgttcaccttttggctagtgca
agtgtggatggacgggtttatgtgtggaaaataacagaaggctcagatgaagaagataag
cctcaaattactggaaagatagttattgccttacagattactggagagggggattctctc
catcctagagtttgttggcactgtcataaacaagaagttcttgttgtgggaatcggaaga
cgtgttctgaagattgatactacaaaagtgggaaaaggtgaaaagtattcagcagaggaa
ccccttaaatgtccaattgaaaagttgattgatggtgtccaacttgttggcagccatgat
ggagaaataactgacttgtctatgtgccagtggatgacgtctcgcttggtatcggcttca
gtggatggaacgataaagatttgggaggatcgcaagtcaactccaattgcagttctcagg
ccacatgaaggacaacctgtcaattccgtgacctttgtggctgctcctcatcgcccagat
catatcatacttataactgggggccccctgaatcgggaattgaagatttgggtttcagca
agtgaagaagggtggttgcttcctagtgatgcagaatcatggcattgtacccagacgttg
gaattaagaaattcagagggtcgactagaagaaggtttcttcaatcaagtagcagccttg
tcacaagctggccttcttttattggcaaatgccaagagaaatgctatttatgctgtgcac
atggaatatggccctaatccagcagcaagccgttttgattatatagcagaattcacagtc
actatgccaatacttagttttacagggacaagcgaagtacgacctcatggtgaacaaatt
gttcaagtatattgtgttcagacacaggctattcagcagtatgctttggacttgtcacag
tgtctgccaccccctacagagaatgtagtctatgagaagacagacactagcgtctcacgg
gatgctggaagcattgaagggattgctagtgtggagccttctggcagtaaaccagccgag
atttctatatctagcacagctcccaaggcaagcgtgcatgaaagtagctttgataatgca
tcggccgttaggtacgctgttggtgctgtttctggtgagtcaccagtcacacaagagttt
gctacctcaagtatggagtccaaacaagttaatttgtccagagctgctaatgatactgat
atttctcttgccacttcaactccactccctctgagtcccagggtttctagaactctatct
ggttttagtcgatcaagcagcattgagcatggttcgccaggttcggagcagaaagtgatt
gagtattcagtggatagaccaatagatggtgttcatggaaacttgcctgctgttacttca
ttgggtgatgattcacaagatgatatttctgctgctcccaaccatccaatcaagttcaaa
cacccaactcatttggtaactcctgctgagatattgatggccacttcgtcctctgatgtt
aaccacacaattgagcctcaaagtgagggcgaccataatattcaagacgtggtagttagc
aacgatacaaggaatgttgaggtagaggtcaaagttgttggcgaaacaaactttagtcca
agtaatgacattgggccccgagaagaacttgaggcttttgtgccagagaatagggataaa
atcttttgctctcaagcttctgatcttggaatggggatggctcgggaatgccgtgcccta
tcgcctgaaatttacgctgtggaggaagctaggcaggttagtgggacagctggaacagaa
gcagatacccgatcctctaccatagttgaagaagaaggtcatgactctgtaaaggatgtg
attcaaagggatgacgattcttcaactcctctgccagctcaaccaactgcaccaactacg
aaagggaagaagcagaagggaaagaatgtgcaaggatcaggccaatcttcacaatcacct
agcgagtccagttcaactgattatcctgttgaaccaggtgttagctctagtactcctcag
caggaaactggagtttcacaaatgcttccaatgcaagagatgctgaatcagattgtaagc
atgcaaaatgaaatgcacaagcaaatggcaatgatggttgctgttccagttaccaaggag
ggaaaaagacttgaggcagccttgggaaggagcatggagaaagctgtcaaagccaattct
gatgctttgtgggctcgtcttcaagaagaaaatgcaaaacaggaaagagcagcaaaggag
cgtatgcaacagctaacgaatacaatcagcaattgcttaaacaaagacttacccgctatt
gtggagaaaactgtcaagagagaactgaccacagttgggcaatctgtggcacggaccatt
actccggccattgagaaaataatttccacttctattacagagagcttccagaaaggagtt
ggtgataaagctgtaaatttgttggagaaatcaatcagctcgaaacttgaaactgtagtt
gctaggcaaatccaagttcagtttcaaacttctggcaagcaagctcttcaggacaccctg
aaatcaagcctggaagtttctgtaatccctgcatttgagatgtcatgtaggaccatgttt
gagcaggttgatacagcatttcaaaaaggaatggttgaacatacgtcagtggctcaacaa
caatttgaggcgtcacattctccgttagcccttgcactaagggatgctataaattcagca
tcatcaatgactcaaactttgagcaacgagttgcttgatggccaaagaaaattgttagct
attgctgtatctggagccaattctaaagctccaaatctgttaagccaactaagtaatggt
cctttgggttcgctccatgagaagcttgaggttcctcctgacccaaccaaagagctatct
agactgatggctgagcgcaagtatgaggaagctttcactgctgccctacagatgagtgat
gttaataccgtatcatggttgtgttctcaggttgacttacccggaattttgtcggtgaat
cctcttcctttgagccaaggtgtacttctctcccttctacagcaattggcttgtgatatc
agcaaagatacaccacggaagttaacatggatgagggaggttatgactgcaataaatcca
actgacccgatgattgcagtgcacgtacgcccaatctttgagcaggtgtatcagatcttg
aatcatcagcgcaaccttccagcgatgggtggtactgaacttgccaatattcgcttgatc
atgcatgtcattaattccatgctcatgagctccaaatga
DBGET
integrated database retrieval system
