Salvia hispanica (chia): 125186981
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Entry
125186981 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125186981
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125186981
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
125186981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
AAA_30
AAA_19
Pyr_redox
DUF6385
Spectrin_1st_PEPL
Motif
Other DBs
NCBI-GeneID:
125186981
NCBI-ProteinID:
XP_047939428
LinkDB
All DBs
Position
5:complement(3840208..3862367)
Genome browser
AA seq
2085 aa
AA seq
DB search
MLMELPRLTNSLRSPFDADQAYLNRKSFLQNLNRTSSTAASGESELARKIIYRWDEASFE
VRQLYKQFVVAVVELMGGEVVSEEFQEVAIKAYRLFSGTSESEEDERDRIILSKKFELQK
LVGHTVLDANILKVASLVERLSSLQNKEHGFDYLPELTSEGSEDVEFGADLAFQPPARFL
VDISIENGEDFFEETGTSSSNHDGWSNSLGSANSHTAVSAGSYDLEWLRDACDRIVSAST
SQLPRDELAMTICRILDSEKPGDEIAGDLLDFVGDSSFEIVQDLIMHRKDLVESIHHGLL
VLKSDRSTSNTQIKYPSYATQVTVQTESEKQIDKLRRKEEKKSRRGMDHGTENDLSSFSF
SSLLQASEKKNILDDLVGHGDGAQFAATALPQGTVRKHYKGYEEVIVPPTPTAPLKPGEK
LIDIKELDDIAQAAFQGYESLNRIQSRIFQTTYYSNTNILVCAPTGAGKTNIAMISILHE
IGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLAPLNITVRELTGDMQLSKNELE
ETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVES
TQSMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLQQHYIGISEHNFAARN
ELMNEICFNKVVDSLRRGHQVMVFVHSRKDTGKTAEKLIDMAKLHEDFDLFTNASHPQQG
LIKKDVLKSRNRQLVQFFDYAVGIHHAGMLRADRGLTERLFSEGLLKVLVCTATLAWGVN
LPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYL
RLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGW
DEVVADPSLSLKQRALVSDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIHYSSVET
YNELLRRHMNDSEVIDMVAHSSEFENIVVREEEQNELETLARSCPLEIKGGPSNKHGKVS
ILIQLYISRGAIDSFSLVSDASYISSSLARIMRALFEICLRRGWSEMSSFMLEYCKAVDR
QIWPHQHPLRQFDRDISTEILRKLEERGVDLDRLYEMEEKDIGALIRYAPGGKLVKQYLG
YFPMVQLVATVSPITRTVLKVDLTITPEFIWKDRFHGTALRWWILVEDSENDHIYHSELF
TLTKKMAKGEPQKLSFTVPIFEPHPPQYFIRAISDSWLHSESFYTISFQNLMLPEAHTTH
TELLDLKPLPVTALANGTYEALYRFTHFNPIQTQAFHVLYHTDQNVLLGAPTGSGKTISA
ELAMLHLFNTQPDMKVIYIAPLKALVRERMNDWRKRLVSQLGKHMVELTGEYTPDLTALL
SADIIISTPEKWDGISRNWHSRSYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQ
TERPVRFVGLSTALANAHDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYAASDEHPRQFLAIPEESLQMI
VSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL
VIIKGTEFFEAKSKRYVDFPITDILQMMGRAGRPQFDQHGKAIILVHEPKKSFYKKFLYE
PFPVESSLREQLHDHINAEIVSGTIRHKEDAIHYLTWTYLFRRLGVNPAYYGLEDIDPGT
LSSYLSSLVVSTFEDLEDGGCIKIEEDRVEPTMLGSIASQYYLKYTTVSMFASNIEADTS
LEVFLHVLSGASEYDELPVRHNEENHNAELASKVQYMVDKNLLDDPHVKTNLLFQAHFSR
VELPITDYVTDLKSVLDQSIRILQAMIDVCANSGWLSSTITCMHLLQMVMQGLWCDKDSS
LWMLPCMSDDLVKTLSQRGIFNVLQLLDVPLDSLHFLTKSSNSRLHEELQHFPRIQVRLK
VQKRTAADNSGTRLNVRLEKTNRHKRTGRAFTPRFPKLKDEAWWLVLANTASSHLYALKR
VSFKDVSTTNMDIPSDVKDFQGMKLIVISDCYLGLDQEYSIEQLV
NT seq
6258 nt
NT seq
+upstream
nt +downstream
nt
atgttgatggaactcccgcgcttaactaattctctcagatcaccattcgatgccgatcaa
gcgtatctcaatcgtaaatccttcctccaaaacctcaatcgcactagctctacagctgcg
tctggagagtcggaactggcgcgcaagatcatttatcggtgggatgaagcttcttttgag
gtgcggcaattgtacaagcaatttgtggtggctgtggttgagttgatgggtggtgaagtg
gtgtctgaggagttccaagaagttgcaataaaggcgtataggctattcagtgggacttct
gaatccgaagaggatgaaagggacagaataattttgtcaaaaaagtttgagttgcaaaaa
cttgttggtcatactgttttggatgcaaacatactgaaggttgcatcactggtggagagg
ctttcttctttgcagaacaaggaacatggatttgactatttacctgaactgaccagtgaa
ggcagtgaggatgtggaatttggagcagatcttgcattccaacctccggctcgctttcta
gtggatatttcaatagagaatggagaagattttttcgaggaaactggcacatcatcttcc
aatcatgatggatggtccaatagtcttggctctgcgaattctcatactgctgtcagtgca
ggtagttatgacctagagtggttgagagatgcatgtgatagaattgtcagtgctagtact
tcacagcttcctcgagatgaactggcaatgacaatttgcaggattctcgattcagagaaa
cctggagatgagatcgctggtgatttgctggattttgttggtgatagctcgttcgaaatt
gttcaggaccttattatgcacagaaaggaccttgttgaaagcatccatcatggacttctt
gtcctgaaatctgatagatcaacttcaaacacacagataaaatatcctagttatgccact
caggtaactgttcaaacagagtccgagaaacaaattgataaactccggcgcaaggaggag
aaaaagagtaggcgtgggatggatcatggaactgagaacgacttgtcttcgttttctttc
agttccttacttcaagcaagtgagaagaaaaatatacttgatgatcttgtggggcatggt
gatggggcccagtttgctgccactgcccttcctcagggcactgtgagaaagcattacaag
ggatatgaagaagtcattgttccgcctacaccaactgcaccactgaaacctggggagaag
ctgattgacatcaaggagctagatgacatagcacaagctgcttttcaaggttacgagtct
ttgaaccggatacagagcagaatattccaaacgacttattatagcaacacaaatatactg
gtctgtgcaccaactggggctggaaaaaccaacatagctatgatttctattctacatgag
attggacaacactttaaagatggttatttgcataaagatgaattcaagatagtttatgtt
gctcctatgaaggcattagctgcggaggtcacatcaacattcagccatcggttagccccg
ctaaacataaccgtgagagaacttactggtgatatgcaactctcaaaaaatgagcttgaa
gagacacagatgattgtaactactcctgaaaagtgggacgtcattactcgtaaaagcagt
gatatgtcactctccatgctcgtgaagctcctaatcattgatgaagtacatttgttgaat
gatgacagaggtcccgttattgaagcattagtagctcgcactcttcgtcaggttgaatct
acccaaagcatgatacgcattgttggcctttctgccactttaccaaattatctggaggtt
gcacaatttctgagagtaaatccagacactgggctattcttctttgactcaagctatagg
ccagtacctcttcagcagcattacatcgggatttctgaacacaactttgcagctcgtaat
gaactgatgaatgagatatgcttcaataaggtggttgattcgctgaggcgaggacatcag
gttatggtttttgttcattcgcgcaaagacacaggaaaaactgccgaaaaactgatagat
atggccaaattacatgaggacttcgaccttttcacaaatgcttcacatcctcagcaggga
cttatcaagaaagacgtgttgaagtccagaaataggcaattggtccaattttttgactat
gctgttggcatccatcatgctgggatgctacgcgctgacagaggtctgactgagcggctt
ttctctgagggactattaaaggtactcgtatgcacagcaactttggcgtggggagttaat
ctgcctgctcatactgtggtgattaagggaactcaaatttatgacccaaaggctggtgga
tggcgtgatcttggcatgcttgatgttatgcagatatttgggcgtgctgggagacctcaa
tttgataaaagtggtgaaggcattataatcacgagtcatgaaaaattagcctactatttg
cggcttttgacaagtcaacttcccattgagagccagtttataacctctttgaaagataac
ctgaatgctgaggtggcattgggcactgtaacaaatgtcaaggaagcttgtgcttggctg
gggtacacatatcttttcataaggatgaaaatgaatcctctggcatatggcattggatgg
gatgaggtagttgcagatccatcactgagcctgaaacaaagagctctggtatcggatgcg
gcacgagctcttgacaaggcaaaaatgatgcgctttgatgagaaaagtgggaacttttat
tgtacagagcttggtcgcatagctagccacttttacattcattattctagtgtcgaaact
tacaatgaattgttgagacgccacatgaatgatagtgaggtaattgacatggttgcacat
tcttctgaatttgaaaatattgttgttcgagaggaagaacaaaatgagctggaaacgtta
gctcgctcatgtcctttggaaatcaagggtggtccttcaaataaacatggaaaagtgtct
attcttattcagttatacatatccaggggtgcaattgattctttttcactagtttctgat
gcatcttacataagttcaagtttagctcgcattatgcgagctttatttgagatttgtttg
cggcgaggatggagtgaaatgtcttcattcatgctggagtactgcaaagctgtggatcgt
caaatttggccccaccagcatccactcagacagtttgatagagatatttctacagaaata
ttgaggaagcttgaagaaagaggggtggacttggatcgcctatatgagatggaggagaaa
gacattggagctttaattcgctatgcacctggtggaaagttggtgaagcaatacctggga
tatttcccaatggtccagttagttgctacagtaagtccaataacaagaactgttctaaag
gttgatttgaccattacacctgagttcatctggaaggatcgttttcatggtactgctctg
cgctggtggattttggttgaggattctgagaatgaccatatatatcactcagagctcttc
acattaacaaagaaaatggccaaaggggagcctcagaagctctccttcactgttccaata
tttgagccacatcctccccagtacttcatccgtgcaatttcagattcatggttgcattca
gagtctttctacactatatccttccagaacctcatgctcccagaggctcatacaactcat
acggaactccttgacctgaaaccacttcccgtgactgcacttgcaaatggaacttatgaa
gcattgtacagattcacacattttaaccccatacagacgcaggcttttcatgtgctgtat
cacacagaccaaaatgttcttcttggagctccgacaggaagtggtaaaaccatatcagct
gagcttgccatgctccatctgtttaatactcagcctgatatgaaggttatctatatagca
cctctaaaggctctcgtgcgagaaaggatgaatgattggagaaagcggcttgtctcgcag
cttgggaaacatatggtggaattgacaggggagtatactccagatttgacagctctgtta
tcagctgacattataatttctaccccagaaaaatgggatggtatcagtcgaaattggcat
tctagatcctatgttaagaaggttgggcttatgatattggatgagattcatttgcttggg
gctgaccgtggacccatattggaggtaattgtatctcgaatgagatatatatcatcacag
acagaacggccagttcgatttgttggtctttcaacagctttagcaaatgcacatgatttg
gcagattggttgggtgttgaagaaattggtttattcaacttcaagcctagtgttaggcca
gttcctcttgaagttcatatccagggatatcctggaaagttttactgcccaagaatgaat
agtatgaacaaaccggcatatgcagcaatatgtactcattcaccaacaaaaccggttctt
atatttgtgtcatctcgtcgtcagactaggcttactgcattggacctcattcagtatgca
gcttcagatgagcacccaagacaattcttggctatacctgaagaatcgcttcagatgata
gtctcccaagtaactgatcagaaccttaggcacactctgcagtttggtattggattgcac
catgcaggattgaatgataaggacagatcacttgttgaagaactttttgcaaacaacaag
attcaggtgttggtctgcaccagtacattagcttggggagtaaaccttccagctcattta
gttattataaagggaacagaattttttgaagcaaaatcaaagagatatgttgattttcca
atcacggatattttacaaatgatgggtcgagctggacggcctcagtttgaccagcatggg
aaagctattattctggttcatgaacccaaaaaaagcttctacaaaaagttcctctatgaa
ccatttccagttgaaagcagcctgagagaacagttgcatgatcacataaatgctgaaata
gtttctgggacaattcgtcataaagaggatgcgatacattatctcacctggacatatcta
ttccgtagattgggggttaatccagcatattatggcttagaggacatagatcctggaact
ctgagttcttacttgtcaagcttagtagtgagcacatttgaggatcttgaagatggcggt
tgcattaaaattgaagaagacagagtggagccaacgatgttgggctcaatagcatctcag
tattatcttaaatacacaactgtatctatgtttgcttcaaatatagaagcagacacatcg
ctggaagtttttctccatgtattgtctggtgcttctgaatatgatgagcttcctgtgcgg
cacaacgaagaaaaccacaatgcagaattggccagtaaggttcagtacatggttgacaag
aatcttctcgatgaccctcatgtgaagacaaatcttctgttccaggcacacttctcccga
gttgaactgccaatcactgactatgtaacagacttgaagtcagtgctggatcaaagtata
cgcattcttcaggcaatgatagatgtgtgtgcaaacagtggatggctctctagtacaatt
acttgtatgcatctcctacaaatggtcatgcagggtttatggtgcgacaaagattcctcc
ttatggatgcttccatgcatgtcagatgatcttgttaaaacattgagccagagaggaatc
ttcaatgttttgcagttattagatgttcctttggactctttacattttctcacaaaaagt
tccaactcgcggttacatgaggaactgcagcattttcctcgcattcaagtgcgattaaag
gttcagaagcgcactgctgctgataactctggtacccgtctgaatgtgagattggaaaaa
acaaataggcataagagaacaggaagagcttttactcctcgctttcccaagcttaaagat
gaagcttggtggttggtcctggcaaataccgcctcctctcacctatatgcattgaagaga
gtttctttcaaggatgtctcgaccacaaacatggatatcccatcagacgtgaaagacttc
cagggtatgaagttgatcgtcatttccgattgttatcttggtttggatcaagaatactct
atcgaacaacttgtgtga
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integrated database retrieval system
