Salvia hispanica (chia): 125187751
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Entry
125187751 CDS
T09851
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125187751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125187751
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125187751
mRNA degradation factors
5'-3' decay
Decapping complex
125187751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
125187751
NCBI-ProteinID:
XP_047940342
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Position
5:14498396..14501720
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AA seq
367 aa
AA seq
DB search
MSQNGKLMPNLDEKTTKVLNLTVLQRIDPFVEEILITAAHVTFYEFNIDTSQWSRKDVEG
SLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNASQEVNGIWFYNA
RECEEVANLFSRILNAYSKVPTKSKVSSVKSEFEELEAVPTLAVMDGPLEPTSSNANATE
VSEDPSFTNFFSNTMNIGSAPNTAISGQPFNPSATAIPTSHPQNVTLPTLATAQPPSNLS
ASTPIMSILENTERTTSQRSTDLVKPSTFFGPPPSSSGLVIPPVSSTVPTAPPLNPQGNL
QRPYGAPLLQPFPPPTPPQSLTPTTPTPNYGPVISREKVRDALQLLVQDNQFIDMVYRAM
LSSHQQS
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagaacggcaaattgatgcccaatctcgacgagaagaccaccaaagtcctcaat
ctcacggtgctgcagcggatcgatcccttcgtggaggagattctcatcaccgccgcacac
gtcaccttctacgaattcaacatcgacactagccaatggagtcggaaggatgtggagggt
tcgctttttgtcgttaagaggaatacccagcctaggttccagttcatagtaatgaaccgt
cgaaatactgataatctggtggagaatctcttgggagattttgagtatgaagtccaggtt
ccatatcttctatatcgaaatgcttcacaagaagtaaatggaatctggttttacaatgca
cgtgaatgtgaagaggttgcgaatttgtttagcaggatacttaatgcatattcaaaggtg
cctacaaagtccaaagtatcttctgtgaaaagtgaatttgaagaactagaagcagttcca
acactggcagtaatggatggtcccttggagccaacatcttccaatgctaatgcaacagag
gtttctgaggatccttcttttacaaacttcttcagtaacactatgaacataggatctgct
ccaaatacagcaatttcaggacagcctttcaacccttcagcaactgctattcccacatcc
catccacagaatgttactctgcccactttggcaactgctcagccaccatctaatttatct
gcttctacccctataatgtctattcttgaaaatactgaacgtaccacatcacaacgctca
actgatctggtgaaaccatcaacctttttcggacctcccccttcctcttctggactggta
atacctcccgtatcatcaacggtgccaactgcacctccattgaatcctcaaggaaattta
cagagaccttatggtgcgccattactccagccatttccaccaccaacacccccacaatca
ctcactccaactactcctacaccaaattacgggccagttatcagcagagaaaaggttcgg
gatgcacttcaattgcttgttcaggacaatcaattcatcgacatggtttacagagcgatg
cttagttcacaccaacagtcatga
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