KEGG   Salvia hispanica (chia): 125187807
Entry
125187807         CDS       T09851                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
shis  Salvia hispanica (chia)
Pathway
shis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125187807
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:shis03041]
    125187807
   03036 Chromosome and associated proteins [BR:shis03036]
    125187807
Spliceosome [BR:shis03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    125187807
 Complex B
    125187807
 Complex C
   U2 SnRNP specific factors
    125187807
Chromosome and associated proteins [BR:shis03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    125187807
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd ParcG Adaptin_N
Other DBs
NCBI-GeneID: 125187807
NCBI-ProteinID: XP_047940407
LinkDB
Position
5:20669572..20673931
AA seq 1258 aa
MDDDLEIQRLKEERQKMEKDLAALTSLTFDTDLYSSNKFEGYEQSIAVNEDDDNADPAEN
EIARKMASFTAPKQYYKETLRSGEEDEMSGFKQPGKIIDREDDYRRRRLNRIISPERNDP
FQDKTPGPEVRTYVDVMKEEALKRKEEEVRREIAKRKKEEEENKEKEKDVEKPKKRNRWD
MSQDENAGGTKKSKAASDWDMPDSTPGIGRWDATPTPGRIGDATPSLSRKNRWDETPTPG
RLNDSESTPAGGVTPGATPAGMAWDATPKLGGLATPTPKRQRSRWDETPATMGSATPGAT
PAAAYTPGVTPFGAVDMATPTPNALMRSAMTPEQYNLLRWEKDIEERNRPLTDEELDSMF
PEEGYKILEPPASYVPIRTPARKLLATPTPMGTPLYNIPEENRGQQFDVPKELPGGLPFM
KPEDYQYFGSLLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKARELG
AGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDY
YARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPF
LKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITAL
SLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIYASYYTK
EVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFRNFWVRRMALDR
RNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDAR
LEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAK
VRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEML
KAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ
TAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVV
LNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPVLEDEDSNVFSRPELHMFV
NT seq 3777 nt   +upstreamnt  +downstreamnt
atggatgacgatttggagattcaaaggttgaaagaggaaaggcaaaaaatggagaaggac
cttgctgcactcacttctctaacctttgacactgatctctatagttcaaacaagtttgaa
ggctatgaacaatctatagctgtgaacgaggacgatgataatgcagatccagctgagaat
gagattgctcgaaagatggcttcatttactgctccaaagcaatattataaggagactctg
aggtctggggaggaggatgagatgtctgggttcaagcagccaggcaagattattgaccgt
gaagatgattataggaggagaaggttgaataggattatatccccagagagaaatgatcct
ttccaggacaagacccctggtcctgaagtgaggacttatgttgatgtgatgaaggaagaa
gcgctgaagcgtaaggaagaggaggtgaggagggagatagcaaaaagaaagaaggaagag
gaggagaacaaggagaaggagaaagatgttgagaagccaaagaagaggaatagatgggat
atgtcccaagatgagaatgctggtggtacaaagaaatctaaggcagcatctgactgggat
atgcctgactcaactcctggaattgggaggtgggatgcaacaccgactcctgggaggatt
ggggatgcaacaccctcgctctctaggaaaaatagatgggatgagactccaacccctgga
cgccttaatgattctgaatcaactcctgctggaggtgttacacctggagcaacacctgca
ggaatggcttgggatgccacacctaagctgggagggctagccactccgaccccaaaacgg
cagagatccaggtgggatgagactccagccactatgggtagtgctactcctggcgcaaca
cctgctgcggcatatacccctggtgtcactccttttggggctgttgacatggctacaccc
acaccaaatgctcttatgcgaagcgcgatgactcctgaacaatataatctcttaaggtgg
gagaaggacattgaggaaaggaataggccactgactgatgaggagctggattcaatgttt
ccagaagaagggtataagattttggaaccccctgcctcctatgttcctatcagaacccct
gctaggaaacttcttgctacaccgactcccatgggaacacctctttataacattccagaa
gagaatcgaggacagcaatttgatgttcctaaagagttgcctggtggtttgccatttatg
aaaccagaagattatcagtactttggctcgctgctgaacgaagaaaatgaagaagagctg
tctccggaagagcagaaggagcgtaagatcatgaaactcttgctaaaagttaaaaatggc
actcctccacagaggaagactgctctgagacagcttacagataaggcaagggaattgggt
gctgggcctctgttcaaccgtattctgccactgcttatgcagcccacactggaagatcaa
gagagacacttgctggtaaaagttattgatagggtgctctacaagttagatgaactggtt
cgtccatatgtccacaaaattttagtggttattgagcctttgttgattgatgaagattac
tatgctcgtgtagaaggtagagaaatcatctcaaatctgagcaaggcagctgggttggcc
actatgattgctgcaatgcgtccagatattgataacatagatgagtatgttagaaacacc
actgctagagcttttagtgtcgttgcctctgcccttgggattcctgctctgttgccattc
ttgaaagctgtctgtcagagtaagaagtcatggcaagcgcggcacactggtatcaagatt
gtgcagcagatcgctattttaataggctgtgcagtacttcctcacttgagatcccttgtt
gagatcattgagcatgggcttaatgatgaaaatcagaaagtcagaacaattacagctctt
tctctggctgctcttgctgaggctgctgctccatatggtattgaaagctttgactctgtg
ttgaagcctctttggaagggtataagatctcatcgtgggaaagtacttgcagctttcctt
aaggcgattggtttcatcataccactcatggatgctatatatgctagctactatacaaag
gaagtcatggttattctgattcgtgaattccagtctccggatgaagaaatgaagaagatt
gtgctgaaagtggtgaagcaatgtgtgagtacggaaggtgttgaggcagaatacatcaga
aatgatatccttcctgaattcttccgcaatttttgggtccggaggatggccttggataga
agaaattataagcaacttgtggagacgacggttgagatagctaacaaagttggggttgct
gatatagttggaaggattgttgaagacctgaaagacgaaagtgagccttatagaaggatg
gtaatggagacaattgagaaggtggttgccaacttgggggcatctgatattgatgctcgc
ttggaggagctattaatcgatggtattctttatgcattccaagaacaaactagtgatgat
gccaatgttatgctcaacggtttcggcgctgttgtgaactcccttggccagagagtgaag
ccatatcttccccaaatatgcggtaccataaaatggcgtcttaacaataagagtgcaaaa
gtgagacaacaagcagcagatcttatatctaggattgctgtggttatgaaacagtgtgga
gaagaacaactgatggggcatcttggcgtcgtgttgtacgagtatctgggggaggaatat
ccagaggttttgggttcaatattgggtgctctcaaggctattgtcaatgttattggtatg
actaagatgactccacctatcaaagatttgcttcctcggctgactcctatattgaagaat
cgtcatgagaaagtccaagaaaactgtattgatctcgttggaagaattgctgatcgtggt
gctgaatttgttcctgcaagggagtggatgaggatatgcttcgagctcctggagatgctc
aaagcacacaagaagggtatccgcagagcaacagtcaacactttcggttacattgctaag
gccattgggccgcaagatgttctcgcaacattgctgaacaacctcaaggttcaggaacgt
caaaatcgtgtgtgcacgactgtggccatagcaattgttgcagaaacatgctcaccgttc
acggtccttcccgcattgatgaacgaataccgcgtccctgagctgaacgtgcagaatggt
gtcttgaaatcgctgtctttcctgtttgaatacatcggtgaaatgggaaaagactacata
tacgcagtgactcccctgctggaggatgcactcatggacagggatctagttcatcggcaa
acggcagcatcagctgtgaagcacatggctcttggtgttgcaggccttggatgcgaggat
gctcttgtccacctcatgaactatgtatggccaaacatttttgagacgtcgccgcatgtg
ataaatgctgtcatggaagctatcgaaggcatgagggtggcattgggtgctgccgttgtg
ctaaactactgtctgcaggggctgttccatccagcaaggaaggttagagaagtgtactgg
aagatctacaattcgctatacatcggtgctcaagatgcgctcgttgcttcgtatcccgta
ctcgaggatgaggacagcaatgtattctctaggcctgaactgcatatgtttgtctga

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