Salvia hispanica (chia): 125187921
Help
Entry
125187921 CDS
T09851
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1
KO
K12236
transcriptional repressor NF-X1
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shis03000
]
125187921
04121 Ubiquitin system [BR:
shis04121
]
125187921
Transcription factors [BR:
shis03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
125187921
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
125187921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
125187921
NCBI-ProteinID:
XP_047940539
LinkDB
All DBs
Position
5:7320807..7324859
Genome browser
AA seq
1117 aa
AA seq
DB search
MSSEPNSRRENNNYRPRNNNSSRNNRREWVPRGSAPVVAAVEVPPATADSAGQNESGNGG
ALVGRPVHPVVPNRNRVHGASRGNPGQRHVVQREKEKVERKHFRDDNGRIMKGVNIPQLV
QEIQDKLSKGSVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSVDLLAEKNQ
GTNWRCPGCQSVQLMSAKEIRYICFCGKRPDPPSDLYLTPHSCGEPCSKPLERELPGSGM
SDEDICPHVCVLQCHPGPCPPCKAFAPPRRCPCGKQVITTRCSDRKSVLTCGKICEKLLD
CGRHRCASVCHVGPCDPCQVLVNASCFCRKKVEVLLCGDMAVKGEINDQDGLFSCNLSCE
NKLNCGNHVCQEVCHPGPCGECELLPGKIKACCCGKTSLNEERQSCLDPIPTCTQNCGKT
LACKLHNCQSVCHSGPCPPCNVLVTQKCRCGSTSRAVECYRTAPSVEKFTCDRPCGQKKS
CGRHRCSERCCPLSSSLNSSMVDGNPHLCTMPCEKKLRCGQHSCTSLCHSGHCPPCLETI
FTDLSCACGQTSIPPPLPCGTPPPSCQYPCSVPQPCGHPSSHSCHFGDCPPCTVPIPKEC
VGGHVVLRSIPCGSKDIRCNKLCGKTRQCGLHACSRTCHPAPCDSSAASSTSLRTSCRQT
CGAPRRDCRHTCTAMCHPATPCPDVRCEFPVTISCSCGRVNATVPCDAGGSSGGYSADTV
LEASIIQKLPAALQPVEENVEKIPLGSRKLMCDDECAKVERKKVLADAFGVTAPTLDALH
FGDTASVSEVLSDLLRRDPKWVLSVEERCRYLVLGRGRGGLNAIKVHVFSVMTKEKRDAV
RLVAERWKLSVNAAGWEPKRFVIVHVTPKSKAPARMLGVKSCNPGNMLQPPIFDPLVDMD
PRLVVALFDLPREADVSALVLRFGGECELVWLNDKNALAVFSDPGRAATAMRRLDQGSVY
YGAVAVPQNGGASATTSGTGAWGSSAASKDAASGAILKENPWKKVVLQDSEHKESSWGGA
EEWSANAADPKLHHWKDKEAPTASSSNRWSVLQSGSSSKSSDASTKTENRQKQPETPPNL
SSSKGEESSLNAAALQPEGMSNSGSGDVVDDWENAYD
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagctcggagccaaatagccggagggagaacaataattatcggcctagaaacaacaat
tcttctcggaacaaccgtcgtgagtgggtccctcggggcagtgcgcctgttgttgccgcc
gtggaagttcccccagctactgctgatagtgctggccagaatgagagtggaaatggtggg
gcgttggttggtaggcccgtccatcctgttgttccgaaccggaatagggtccatggtgca
tcaagaggaaaccctggtcaacggcatgttgttcagagggagaaagagaaggtggagagg
aagcatttcagagacgacaatggtaggataatgaagggggttaacataccccaacttgtg
caggaaatccaggataagctttccaagggatctgttgagtgcatgatctgttatgacatg
gttcgcaggtctgcacccgtatggtcgtgctctagctgctattcaatttttcacctgaat
tgcataaagaaatgggctagagctcctacttctgttgatttgttggctgagaaaaatcag
ggtactaattggcgttgccctggatgccaatcagtgcagcttatgtcagctaaggagatt
cgatacatctgcttttgtggcaagagaccagatccaccttcagatttatatttgactcca
cattcttgtggagagccttgcagtaaaccactggaaagggagcttcctggtagtggcatg
agtgatgaggatatatgtcctcatgtttgtgttctgcagtgccatcctgggccttgccct
ccttgtaaggcctttgctcctccccgtaggtgcccttgtgggaagcaagttattaccacg
agatgctctgatcggaagtctgttctcacttgtgggaagatatgtgaaaagcttcttgac
tgtggtcggcatcgctgcgcaagcgtctgtcatgtggggccatgtgatccttgccaggtc
cttgttaatgcttcttgtttctgtaggaaaaaggttgaggttcttctttgtggagatatg
gctgtcaagggagaaatcaatgaccaagatggtttattctcatgcaacttatcttgtgag
aataaattgaattgtggaaaccatgtttgccaagaagtttgtcatccaggtccatgtggg
gaatgtgagctgctgccaggaaagattaaggcatgctgctgtggtaagactagcttaaat
gaggaaagacagagttgtttggatccaattccaacttgtacgcagaattgtggcaagacc
ctggcttgcaagctgcataactgtcagagtgtgtgccattcagggccgtgtcctccctgt
aacgttcttgttacccaaaagtgtcggtgtgggtcgacctctcgagctgtagagtgctac
agaactgctccgagtgttgaaaaattcacttgtgatagaccttgtggccagaagaaaagc
tgtggcaggcatcggtgcagtgagcgttgctgtcctctctctagttccttgaattcttcc
atggttgatggaaacccacatttgtgcacgatgccatgtgagaagaagctacggtgtggt
cagcattcttgcacatcactgtgtcacagtggtcattgtcctccttgcctggagacaatt
ttcaccgacttgtcttgtgcttgtggtcaaacttctattcctcccccattgccttgtggt
acacctccaccttcatgtcagtacccttgctcagttcctcagccttgtggtcatccatct
tcacacagctgccattttggagactgtccaccttgcacagttcctatccccaaggaatgt
gtgggtggacatgttgttcttcgcagtatcccttgtggatcaaaagatattagatgcaat
aaactatgtggaaagacgaggcagtgtggtttacatgcatgctccagaacttgtcatcca
gccccatgtgattcttctgctgcatcaagtacgagcttgagaacatcttgtaggcagaca
tgtggtgctccgaggagagattgtaggcatacttgcacagctatgtgtcaccctgccact
ccatgtcctgatgtaagatgcgaatttcctgtcacaatctcttgctcctgtggccgagta
aatgcaacagttccttgtgatgctggtggcagcagtggaggatatagtgctgacacagtt
cttgaagcttctataatacaaaagttgccggcggctctacaacctgttgaggaaaatgtc
gagaaaattccccttggttcgaggaagctaatgtgtgatgatgaatgcgcaaaagtggag
cgcaaaaaggttcttgctgatgcttttggtgttactgccccgaccttggatgcacttcac
tttggtgatactgcttctgtttctgaagtgctttctgacctcttgaggcgtgatcctaag
tgggtcttgtccgtcgaagagagatgcaggtacctggtccttggtaggggcaggggtggg
ttaaatgctattaaagtccatgtgttctctgtgatgaccaaggaaaaaagagatgcagtg
aggctggtagctgaaaggtggaaactctctgtcaatgcagctggatgggagccaaagaga
tttgtcattgttcatgtcacaccgaagtcaaaagccccagctcgcatgcttggtgttaag
tcatgcaatcctggtaacatgttgcaacccccgatatttgatcccctggtggacatggat
ccccgccttgttgtggctttatttgatttacctagggaagctgatgtcagtgcactggtg
ttgaggtttggtggggaatgtgaattggtttggttgaatgataagaatgcattagctgtc
ttcagtgatccagggagagcagcaactgctatgaggagattggatcaggggtctgtgtat
tacggtgctgttgcagttcctcagaatgggggggcctcagcaacgacttcaggcactggt
gcatggggatcttctgcagcttccaaagatgctgcatctggagcgatcctgaaagagaac
ccttggaagaaggttgtcctgcaggactctgagcacaaggaaagctcgtggggaggagct
gaggagtggtctgctaatgcagctgatcccaaattgcatcactggaaagataaggaagct
ccaactgcttcttcaagcaaccgctggagtgtcctgcaatcgggaagcagttcaaaatca
tccgatgcttctacaaaaacggagaatcgtcagaaacagccagaaactcctccgaacttg
tcgtcttctaagggagaggaatctagcttgaatgcagcagcattgcagccagaaggcatg
agcaacagtgggtctggtgatgtggtggacgattgggagaatgcctatgattga
DBGET
integrated database retrieval system
