Salvia hispanica (chia): 125187981
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Entry
125187981 CDS
T09851
Name
(RefSeq) chromatin-remodeling ATPase INO80 isoform X1
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125187981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125187981
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
125187981
INO80 complex (yeast)
125187981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
125187981
NCBI-ProteinID:
XP_047940643
LinkDB
All DBs
Position
5:complement(11830950..11842217)
Genome browser
AA seq
1509 aa
AA seq
DB search
MDSKRNYTYGNLFNLEPLMNFQLPKQDEDFDYYGNSSQDESRGSQGGALGDMNGTMSERG
SKMKRRSAYSSDEEGTGSYSSYISEERYRAMLGDHIQKYKRRLNYAPPNPGQTRTGTMAI
KSNVALKDQKPMNDNRGGFPKFESTSDFLNTSSSQKLGNYPESDFGQQHGASRPNLEPAF
LDIGDGITYRIPPPYEKLSSSLSLPSMSDIQVEEFYLKGTLDLGSLAAMMASDNKFQHGS
RAGMGDQRPQYESLQARLRAQQTNNYAENFCLSISETALGSDGIPEGAAGRIRRSILSEG
GILQVYYVKVLEKGDTYEIIERGLPKKAKVKKDPSAIEREEMEKFSKYWVNIARKEIPKH
HRIFTNFHRKQIIDAKRVSETCQREVKMKVSRSLKLMRGAGIRTRKLARDMLVFWKRVDK
EMAEVRKREEKEAAEALKREQELREAKRQQQRLNFLLSQTELYSHFMQNKASEPSGALAV
GDEKSDDQEILSEDQLQEEEDPEAAVLRREALRAAHDAVSKQKKMTSAFDNECLKLRLAG
EAEVPLQDGLVTESSNIDLLHPSTMPVGSTVQTPEMFKGSLKEYQLKGLQWLVNCYEQGL
NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLP
YWGGLQERTVLRKNINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAI
KSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGI
ESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELTGKTEVTVHCKLSSRQQAFYQA
IKNKISLAELFDGNRGHLSEKKILNLMNIVIQLRKVCNHPELFERNEGSTYFHFGDVPNS
LPPPPFGELEDVFYSGGRSPITYEIPKLVYQETVGGFKAHNSEAGQCLSRESIQKLFNIF
SPENISSSSLQKDCGRRGTFEFSRFIDLSPAELSFLATGSFMERLLFSIIRSDRQYLDEI
LDLLMESDNGDVHDIQNAHIGKEKVRAVMRMLLLPSRSQKSVLRRKLATGPLDAPFEALI
IPYQDRLLSDIKLVHSVYSFIPRTRAPPINVRCSDRNFAYKMVQEWHDPWLKRLLTGFAR
TSDYNGPRKPIGTHPLIQEIDAELPITQPALQLTYRIFGSCPPMQPFDPAKMLTDSGKLQ
TLDILLKRLRAQNHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVKDFQ
HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRL
ICKETVEEKILQRASQKNTVQQLVMTGGHVQGDLLAPEDVVSLLIDDAQLEHKLKEVSQQ
AKDRQKKKSGAKGIRIDAEGAVSLEDFANAELQDNDFEPPDPEKPKSSSKKRKPAGDKQT
QPKARAQKSSKQVDSSSPNQTPADYEHEDPSQLVDSRQQRPKRLKRPTKSVNENIEPAFT
AIQHQSSEL
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggactccaagaggaactatacatacggaaatctcttcaatcttgagcctttgatgaac
tttcaactgccgaaacaagatgaagattttgattattatgggaatagtagtcaggatgag
agcagaggtagccaagggggagctttaggcgacatgaatggaacaatgtcggagagggga
tcaaaaatgaagaggcggagtgcttatagtagtgacgaggaaggaacaggcagttacagt
tcatatatttcagaggagcgatatcgtgcaatgcttggagatcatattcagaagtacaaa
aggaggctcaactatgcccccccaaatccaggacagacaagaactgggactatggcaatc
aaaagtaatgtggcccttaaagatcagaaaccaatgaatgataacagggggggatttccc
aagtttgaatcgacttcggattttctaaacactagtagttctcaaaaactaggaaattat
cctgaatcagattttgggcagcaacacggtgcttccagaccaaatcttgaaccagctttt
ctggatataggggatggcattacatataggattcctcctccctatgaaaagctgtcgtct
tcactaagtttgccaagtatgtcagatatccaagtggaggaattttacctaaagggtacc
cttgacttggggtcattagctgcaatgatggcttctgataacaagttccagcatggaagc
agggcagggatgggtgaccaacggcctcagtacgaatcacttcaggctagattgagagcc
cagcagaccaataattatgctgagaatttctgtctaagcatcagtgaaacagcattggga
agtgatggcattcccgaaggggcagctggaaggattaggcgatctatattgtcagaaggt
ggtatattgcaggtgtattatgtaaaagttttggagaagggggatacttatgagatcatt
gaacgtggtttacccaagaaggcaaaggtgaagaaagacccttctgcaattgagagggaa
gaaatggaaaagttcagtaaatattgggttaatatagcaagaaaagaaattccaaaacat
cacaggattttcaccaatttccacagaaagcaaattattgatgctaagagagtttctgaa
acctgtcaaagagaggtgaaaatgaaagtcagcaggtccctcaaattgatgaggggtgct
ggcatcaggacaaggaaactggctagagacatgctagtgttttggaagagagttgacaag
gagatggcggaagtgaggaaaagagaagaaaaagaagctgctgaagctctgaagcgtgaa
caagaacttcgtgaagctaagaggcagcagcagaggctcaattttctgttgtcacagaca
gaactttacagtcacttcatgcagaataaggcctcagaaccctcgggagcattagcagtg
ggcgatgaaaaatctgatgaccaagaaattctttcagaagatcagctgcaggaggaagag
gatcctgaagctgctgtattaagaagggaagctctcagagctgctcatgatgcagtttca
aagcagaagaaaatgacaagtgcatttgataacgaatgcttaaagctacgtctagctgga
gaagctgaggtccctctccaagatggcttggtcactgagtctagcaatattgatttgctg
cacccgtcaaccatgcctgtaggatcaacagttcagacgcctgagatgttcaagggttcc
cttaaagaatatcagctgaaaggccttcagtggcttgtaaattgttacgagcagggatta
aatggtattctcgctgatgaaatgggtctgggaaagacaattcaagctatggcattcctg
gctcatttggctgaggaaaaaaatatatgggggccttttctggtggttgcacctgcttct
gtcttgaacaattgggctgatgaaatcagccgtttctgtcctgacttgaagactcttcca
tattggggtggtcttcaggagcgtacagtgcttaggaagaacatcaacccaaagcgtctt
tatcgaagggaggctggatttcacattctcatcaccagttaccagctgctggtttctgac
gagaagtactttcgccgtgtgaaatggcaatacatggtgttggatgaagcccaggcaatc
aaaagttccaacagtataagatggaaaacactgctcagcttcaattgccgaaaccgcttg
cttctgactggaactcctattcaaaataatatggctgaactgtgggcactcttacatttt
attatgccaactttatttgatagccatgaacaattcaatgaatggttttcaaaaggaatt
gagagtcatgcagaacatggtgggacattaaacgagcaccagcttaatcgattgcatgcc
attctgaaacctttcatgctgaggagagttaagaaggatgtggtctctgagttgacagga
aaaaccgaagttaccgtacactgtaaattaagttctcggcagcaagctttttaccaagct
ataaagaacaagatatcccttgcagagttgtttgatggaaaccgtggacatcttagtgag
aaaaagattctgaacctgatgaacattgtcatccagctcagaaaggtgtgcaatcatcca
gaattgtttgagagaaacgaaggaagcacgtattttcattttggagatgttccgaattct
cttccccctccccccttcggcgagctggaagacgtcttttactctggtggcagaagccct
attacttacgagatacccaaactagtctaccaagagactgttggtggtttcaaggctcac
aactcagaagctggccagtgtttaagcagggagtcaattcagaagttatttaacatattc
tcaccagaaaatatctccagttcttcactccaaaaggattgtggacgaaggggaacattt
gaattctcccgctttattgatctatcaccagcagaattgtcattcttggcaactggttct
tttatggagaggttattattctccattataagatcagatcgccaatatttagatgaaatt
ttggacctgttgatggaaagtgataatggtgatgtccatgatatccagaatgctcatatt
ggcaaggaaaaagtgagagctgtcatgcgaatgttgctactgcctagtaggtcacaaaaa
agtgttcttagaagaaagcttgcaacaggtcctttggatgctccattcgaggctctaatc
attccttaccaggacagacttctatctgatatcaagcttgtgcattcagtatactcgttc
atccctagaactagagcacctccaataaatgtccgctgttctgatagaaactttgcatac
aagatggttcaagagtggcatgacccctggttaaagaggttgttaactggatttgcacga
acatctgattataatggcccaaggaaaccaattggcactcaccctttaatacaagagatt
gatgctgaattaccaatcactcaacctgcccttcagcttacttacaggatcttcgggtct
tgtccacccatgcaaccattcgaccctgcaaaaatgttgacggattctggcaagcttcaa
acgcttgatatacttttaaagcgtctacgggctcaaaatcatcgtgttcttctttttgcg
caaatgacaaaaatgctgaatatccttgaggattatatgaactatagaaaatatcggtat
ttgaggcttgatggttcatccacaataatggatcgccgtgacatggtgaaagatttccag
caccggagtgatatctttgtgttcttgctgagcacaagagctggtgggcttggaatcaac
ttgacagctgctgacaccgtcatattttatgaaagtgactggaatccaacattggatctg
caggcaatggatcgggctcatcgtctgggtcaaactaaggatgtaactgtttaccgctta
atctgtaaagagacggtagaagaaaaaattcttcagagagcgagtcagaaaaacaccgtc
caacagcttgtgatgactggtggtcatgtccaaggagaccttttggctcctgaggacgtc
gtatcattattgatcgatgatgctcaactggagcataaactaaaagaagtttcacaacag
gcaaaagataggcagaagaagaaaagtggtgctaagggcatcaggatcgatgcagaagga
gctgtgtctttggaggattttgctaatgcagagttacaggacaatgactttgaacctcca
gatcccgaaaaaccaaaatccagcagcaaaaagaggaaacctgctggtgacaagcaaaca
cagccgaaagcaagggctcagaagagctcaaaacaggtggattcatcatcaccaaatcaa
acaccagcagactacgaacatgaggatccctcgcagctcgttgactccagacagcaaaga
ccaaagagattgaaaaggccaacaaagagtgtgaatgagaacattgaacctgcattcaca
gctattcaacaccagagctcagaactgtag
DBGET
integrated database retrieval system
