Salvia hispanica (chia): 125188053
Help
Entry
125188053 CDS
T09851
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125188053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125188053
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125188053
mRNA cycle factors
Common to processing body (P body) and stress granule
125188053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
125188053
NCBI-ProteinID:
XP_047940748
LinkDB
All DBs
Position
5:12026929..12032987
Genome browser
AA seq
985 aa
AA seq
DB search
MTLVMDSDKGNPTRERVQQLFNKNVELENKRRKAAQARIPSDPNTWQNMRENYEAIILED
HAFSEQHDIEYALWQLHYRRIEELRALFAAAASAGSPAPQNGKGTLRAVPDRLTKIRTQF
KTFLSEATGFYHDLMLKIRSKYGLPLGYSSDDPENQIPMSKDGNTSSEGKKGLMSCHRCL
IYLGDLARYKSLYGEGDSKARDFAAASSYYLQASSIWPSSGNPHHQLAILAGYSNDELLS
IYRYFRSLAVDIPFVTARDNLIIAFEKNRQNYSQILGDGKAPSVKMSPARLPGKGKGKGE
PRHALKENKPVASTLKERAPNKSELFKAFITKFIRLNGILFTRTSLEIFPEAFSMVKSDL
LELLSSGPDDELNFGSDATECRLAIIRMIAILIFTVHNVSREGENQSYADILQRSVLLQN
AFTASFEFVGSILERCNHLSDPSSSYLLPGIMVFVEWLACRQDFAVGSELEEKQVNARSF
FWNKCIVFLNKLLSSGLVSITEDEDETCFSNMSKYDESETANRLALPEDFELRGFHPLLP
AQLILDFSRKHLFVGDGGSKERIARVKRIIAAGKALANVVRVGPDGVYFDDRMKKFVFGS
EPQVPDENLLPSHLEPNVNDNSLDISSVGRMALAALPKIEVRVEADDEDDEVIVFRPPTT
ERHMDEFSLKLTSPAISASVSEASKVNFGNEKGSLSGVQDGFLLQSALTAGMESFASGFN
TVANGTTQYPQPIQPSTSMCSSNHSPIASGMAQMNLMANGVRSDLQDKFEVYQHASVSLP
YPQFMNAGPSHNHPIMNPQASVPSKFDSIIPSGSFVDGLSIKPSLAMPPGSKKNPVSRPV
RHIGPPPGFGSVRSKVVDEALFNSNPQNGTSLPQTDDYSWLDGYQLSSSNQGGGFSNSGN
QVVPAFPSVSNINGLMGTATFPFPGKQVPIQVQSNKQNGWQEHPYSEHMLHYEEQQKEFQ
KGNQQLGLPQQQYQGQSLWEGRFFV
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgaccttggtgatggatagcgacaaaggaaatcctactagagagcgtgttcaacaactt
ttcaacaagaatgttgagttggagaacaagcgaagaaaagcagcgcaggccagaatccct
tcagatcctaacacatggcagaatatgcgtgaaaattatgaagcaattatccttgaagac
catgctttttctgaacaacatgatatagaatatgctctatggcaattgcattataggagg
attgaggagctaagggccctctttgctgcagcggcttcggcaggatcacctgcaccccaa
aatggtaaagggacactgcgtgcggtacctgatcgacttacaaagatccgtactcagttt
aagacattcctctctgaggctactggattttatcatgatttgatgttgaagataagatct
aagtatggactcccattgggatattcttctgatgatccagaaaatcagatcccaatgtca
aaagatggaaacacatcttcagaggggaaaaaaggcttgatgtcttgtcatcgctgtctg
atctatttgggtgatcttgctcgttacaaaagcttatatggcgaaggggattctaaagcc
cgggattttgcagcagcatcaagttattatttgcaagcttcctcaatatggccttcaagt
ggtaatccacatcatcagcttgccatactggctggatattcaaatgatgaactgctgtcg
atatatcgctattttcgaagtctagcagtggatatcccatttgttactgcaagagataac
ttaatcattgcatttgagaagaatcgtcagaattactcccaaatacttggtgatggtaaa
gctccttctgtgaagatgtcacctgcaaggttgcctggaaagggaaaaggcaaaggcgag
ccaagacatgctttgaaggagaataagccggtagctagtacattgaaggaaagagctcca
aataagtctgaactcttcaaagcttttataacgaaatttattaggttgaatggcattctc
ttcacgcgcacaagcctggaaatctttcctgaagcgttctctatggttaaaagtgattta
ttggaacttctttctagtgggccagatgatgagcttaactttggttcagatgcaactgaa
tgtaggcttgcaatcattagaatgattgctatcctgatatttactgtacataatgtgagc
agggaaggtgaaaaccagtcctatgctgatattctacagcgctctgtcctgcttcaaaat
gctttcactgcttcatttgaatttgtgggcagcattcttgagcggtgcaaccatttatct
gatccctcatcaagctatttgctacctgggattatggtgtttgtggaatggttggcgtgt
cgccaggattttgctgttggcagtgaattggaggaaaaacaagttaacgcaagatccttt
ttctggaataaatgcatcgtgtttctgaataaactcttgtctagtggccttgtatctatt
actgaagacgaagatgagacatgtttctcaaatatgagcaagtatgatgaaagtgaaact
gctaatcgccttgcattacctgaagattttgagttgagaggattccatcctctgcttcct
gctcaactcatccttgatttttcaaggaagcacttatttgtaggtgatggaggcagcaaa
gagaggattgcacgtgtaaagaggattatagcagctggaaaggctcttgctaatgttgtt
cgagttggccctgatggagtatatttcgacgaccggatgaaaaagtttgtctttggttct
gaacctcaggttcctgatgagaatttgcttcccagtcatttggaacctaatgtgaacgat
aactcgctagatatttcatcggttggccgaatggctctggctgctctgccaaagatagag
gtgcgtgtggaagcggatgatgaagacgacgaggtgattgtatttaggcctccaactact
gaaaggcatatggatgagttctctctgaaattgacttctccagcgatttctgcttctgtc
agtgaggctagcaaggttaactttgggaatgaaaagggatccctctctggtgtgcaggat
gggtttctcttgcagagtgcattgactgcaggcatggaatcttttgcatctggatttaac
actgttgctaatggcactactcagtatccgcaacctatccaacccagcacctcaatgtgt
tcatcaaatcactctcctatagcaagtggtatggcccagatgaacttgatggcaaatgga
gtgaggtctgatctgcaagataagtttgaagtatatcaacatgcttctgtttccttgcct
tacccccaatttatgaatgctggtcctagccataaccatcctataatgaatccgcaagct
agtgtaccgtctaagtttgactccatcataccttctgggtcattcgttgatggcctgagc
atcaaaccatcattggccatgccacctggctcaaaaaaaaatccagtgagtcgacctgtt
agacacattggtccgccacctggtttcggctctgttcgttccaaggttgtggatgaagca
ttgttcaatagcaacccccagaatggaacttcacttcctcaaacagatgattacagctgg
ctagatggctatcagctgtcttcatccaatcaaggtggtgggtttagcaattctgggaat
caggtcgtccctgcattcccttctgtgagcaatatcaatggcttaatgggaactgctact
ttccctttccctgggaagcaggtaccgatacaagtccagagtaataaacagaacggctgg
caggaacatccctattcagaacatatgctgcactatgaggagcagcagaaagaatttcag
aaaggaaaccaacagcttggcttgccgcagcagcagtatcaaggacagtcactttgggaa
ggtcgattttttgtgtga
DBGET
integrated database retrieval system
