KEGG   Salvia hispanica (chia): 125188122
Entry
125188122         CDS       T09851                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
shis  Salvia hispanica (chia)
Pathway
shis04120  Ubiquitin mediated proteolysis
shis04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125188122
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    125188122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:shis04121]
    125188122
Enzymes [BR:shis01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125188122
Ubiquitin system [BR:shis04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    125188122
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     125188122
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd zf-C3HC4_2 EIF3I Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_TEP1_C zf-C3HC4 Beta-prop_EML Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 WD40_RFWD3 zf-C3HC4_3 WD40_like zf-RING_2 Beta-prop_WDR75_1st zf-C3HC4_4 zf-RING_UBOX Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st zf-RING_5 U-box Beta-prop_IFT122_2nd DUF1664 Sec23_helical YbfN zf-rbx1 zf-RING_10
Other DBs
NCBI-GeneID: 125188122
NCBI-ProteinID: XP_047940823
LinkDB
Position
5:complement(37845917..37852991)
AA seq 670 aa
MGAQTTSIGGPLVPTVKSEPADSSAAAPPPHSEMDHDSDKDILCPICMQIIKDAFLTACG
HSFCYMCIVTHLQNKSDCPCCSHFLTANHLYPNFLLNKLLMKTSARQTAKTATPLEQLRQ
ALERGCEASVKDLESLMSLLSEKKSKMEQEEAETNLQILLDFMLCLRKKKLDELNEVQSD
LKYIKEDIHAVERRRIELYRRRDRCSSKLRMLGDDPSSKSAWPSVVEKQSGATASRPSLT
PGQSRLTSGDLHSKKADVRSSASHLVLGKDSYGGSDIQNPSQSGQALARKRRVHAQFNDL
QDCYLQKRRYWAKQMPEQQGRDSLSSKREGYSVGLEDFQSVLSTFTRYSRLRVVAELRHG
DLFHSANIVSSIEFDRDDELFATAGVSRQIKIFEFSSVVNEPADSQCPVAEMSTRAKLSC
LSWNKYAKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSCTDPSMLVSGSDD
CKVKVWCTNQEASVLNIDMKANICSVKYNPGSSIHVAVGSADHHIHYYDLRKVSQPLYIF
SGHRKAVSYVKFLSNDELASASTDSTLRLWDVKENVPLRTFRGHANEKNFVGLTANSEYI
ACGSETNEVFVYHKAISKPAAWHKFNNSETEEGEEDAGSYFISAVCWKSDSPTMVTANSQ
GTIKVLVLAP
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgggagcccagaccacttcaattggcggccctctcgtgcccaccgtcaaatcagagccg
gcggattcttccgccgctgctccgccgccgcactcggagatggaccacgactctgataag
gacatcctctgccctatttgcatgcagatcatcaaggacgcctttctcactgcctgtggc
catagcttttgctatatgtgtatcgtcactcatcttcagaacaagagtgattgcccctgc
tgctctcatttcctcactgctaatcacctctaccctaatttcctcctcaacaagttattg
atgaagacttctgctcgtcaaacagctaaaactgccactcctttggaacaacttcgccag
gcactcgaacggggatgtgaagcttcagtgaaggatctcgagagcctcatgtctcttctt
tcagagaaaaaaagtaaaatggagcaagaagaagccgaaacaaatctacagatcctgctt
gattttatgctttgtctgagaaagaagaaacttgatgagctcaatgaggtacaatctgat
ctaaagtacattaaagaagatattcatgcagtggagagacgtcgaatagagttataccgt
cgaagggatagatgttcgtctaaactaagaatgcttggtgatgatccttcttccaaatca
gcatggccgtcagtggttgaaaaacaaagtggtgctacagcctccagaccttctctcaca
cctggccaatcccgccttacttcaggtgatcttcatagcaagaaagctgatgtgagatct
tctgctagtcatttggtactagggaaggatagttatggtgggtcagacatccagaatcct
tctcaatcaggacaggcattagcaaggaagagaagggtacatgctcagttcaatgaccta
caagattgttacttgcaaaagaggcggtattgggcaaaacaaatgccagagcagcaaggg
cgtgactcgctgagttcaaagagagagggatactctgtaggtcttgaggattttcagtct
gttctatcaactttcacaagatacagtcggttgcgggttgttgccgaactcagacatgga
gatctttttcactcggctaacattgtatcaagcatagaatttgatcgagatgatgaatta
tttgctacagctggagtatcacgacagatcaagatttttgagttttcatcagtggttaat
gaaccagcggactctcaatgtcctgtagcagaaatgtctactagagcaaagctaagctgt
ttaagctggaacaagtatgcaaaaaatcatattgccagcagtgactatgaaggcatagta
actgtttgggatgtgactactagacagagtgtgatggagtatgaggagcatgagaaacgt
gcctggagtgttgatttttcatgcacagatccttcaatgcttgtatctggtagtgatgac
tgcaaggtcaaagtatggtgtacaaaccaggaggcgagtgtcctaaacattgacatgaag
gcaaatatatgttcagtcaaatataaccctggatccagcatccatgtcgctgttggctcc
gcagatcatcacattcattactatgacttaagaaaagttagccagccgctgtatatattc
agcggacacaggaaggctgtgtcatatgtgaaatttctgtccaatgatgagcttgcttct
gcttcaacagacagtacattgcgcctatgggatgttaaggaaaatgttcctctgcgcact
tttagaggccatgcaaatgagaagaactttgtggggctaacagcgaacagcgaatacata
gcatgtggtagtgaaacaaatgaagtattcgtctatcacaaggcaatatctaagccggca
gcatggcataagttcaataattctgaaacagaagaaggcgaagaagatgcggggtcctac
ttcataagtgctgtgtgctggaaaagtgatagcccaactatggttacagcaaacagccaa
gggactataaaagtcctcgttctcgctccctga

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