Salvia hispanica (chia): 125188339
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Entry
125188339 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125188339 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125188339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125188339
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125188339
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
125188339
NCBI-ProteinID:
XP_047941075
LinkDB
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Position
5:10036309..10051540
Genome browser
AA seq
1985 aa
AA seq
DB search
MASTAPATTAAQSSDTAKIVDASLWWDPFSALLTELENASVSSETPPDLDRKLKDNHAWF
SDTVSQFKPPNQKSREALDSPRVKVGPHELNIQPKLKDAALKISSILCLDEVQSYIISKR
SLEQHNATTNDLHPDIINLVMLEYYIERQCLLKCTRQIFMHALYFETESEGVSTVLEVAK
RLISGGLECKLLSIFEDLLSSKYPDQMDFDLYTLWAEETLIEDNLILDILFLVYCESFCA
CDAECWKRLCALYEGIVTGSYNFQKLAISPDAIRAIYHAKVQLMLILIQSLNLESLLQMI
HDNISFRQGSLRFSEMEVQQIDSMISSFNAFESKELGPLILAWALFLCLVSSLPEKEENN
KLMEIDHIGYVRQAMEASSLGYFLDILESDTFKYSDGPLAGYRSVIRTFVSAFIASYEIN
IQFEDENLKLILDILCKIYHGEESLCDQFWDRDSFIDGPVRCLLFNLEGEFPFRTIELLR
LLSALSEGAWPSECVFNFLDKSTGLSTPFEIMNGSVVDAVSKIVETHSPLHVAGVEGLII
PGKSRGQVLRMLDDNCALVSLCLALYLSSLQHTVSGVLVLLLRLAKELYMQNPEEVVVIL
DLLSRLASFNTAICCTLMKSWNFSCDGDYVMGNEQSYFRIDIVEIVCAVLKNAPPSISGA
IMMSMGVNILTKMLKCKPSHVATMAMKGNIFDVALRTNPFDVGSNNLSSGSWLLSGRLAK
MLLIDCEQSDCSMTLSVLDFTMNLLEKGLETDTILALIVFSLQYVLINHEFWKYKVKPAR
WKVTQKVLEVMRKCISSISCCPKLGEVVRDIIFSDSSIHSALFRIVCTTAPTLEKLHVSR
LFDILDIEGLELAISSGLNVLLSMISTFSKHPQGSSVFHEAILSMTTKPVPVITAAISFI
SYFRNANIQMAGARLLSALFMADISQSYTHNNMNLGLDDKQVAHFRKSITSILFQQSPSS
EDLIVATLRFLTSAASNQPAFLAAVIASKEYSNTQVQNALEHQPKKTENESLDSLEESPL
YAILQYLKDSEDLLHRKPNMLLCLLKFLKALWQGAPQFSKNLEQLKVADEFWKHLTRSLV
LIAHRDNISEKLTEMDLQNMACECQILSNVLDILSYEIFVQKKLRHAASVVNRISTSPPN
GAEKTEHNLKKNGSLKETISSWCKNSVLSDLIKVCVSSEYDESSHTRAKVAAGAFAVHVM
VKLRSGDSGSLSVSLIERISALSEKLFKLPAFSDLLTQYTERSYSGGQELENLILSDLFY
HIQGELNGRQIDNRPFKELLQFLIDSRFLDAYKYEKDDDLPANDKSVYLYDTVRLKIDLG
LEMWDLLAWKESKDLVKTMLLSLQDANSRMLHSTSKLSALRGLVTLLYMRQNNAEDLTGL
KISEQVVSSGIDHICQSIHASLASLTPAGDASEDIVLDILTAQAELLLLLLRSVETKLSQ
PDRVLILKASSYGLKVLSGCRPTLAAETATRFLLILILSVKLTCKDSGMGYSTETESTEV
SSEVSYSSLGLLPVLCSSIQHPDNCILSLAAIDFILKGFSTPATWFPIIQKHFPLPHIVQ
KLQDAAASKMVPIILKFLLNLARVRQGAEMLLNAGILASLRMLLSDFPDGAPLSVIQGES
IFANFDKTEKSQPIWGLSLAVLTAIIHSLGDNSASVVDYVMACILVEKAPSVFYYLTAPD
LPTNGHENKRARALKSNTSLDELKATQNTLALICVLAEHSNSWKKILQSMESQLREKSIH
LLAFISRATQHPGESPRREAPLSCHPVLKEELELFKKPSFVNSKKGWFALSALGCKSNLN
LALLSSKSTALVLRDQSNDDSNSSDQTHLSDLIAIEMYKTAFLLLKFLCTQTEAAARKAE
EVGFVDIANFPELPMPDILHGLQDQGIAIITELCEANKTKQVASEIKEVCTLLLQVTVMA
LYLEYSVIQICGIRPVLGHVETFSKELRLLIRATEGHVFLKEPLTILKQIVAVVYPELVH
QDALF
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaccgcgcctgcaaccaccgcagctcagtcttccgacaccgcaaaaattgtc
gacgcctcactctggtgggatcctttcagtgcacttctcaccgagcttgaaaacgcctcc
gtgtcatccgaaacccctccagatttggataggaagttgaaggacaatcacgcttggttt
tcggacactgtgtcacaattcaagccgcccaatcagaaatcgagagaagcattggattca
ccacgtgtgaaagttggcccacacgagttgaatatacagccgaaattgaaagacgctgca
ctgaagattagtagtatcttgtgtttagatgaggtgcaatcatatatcatttccaaaaga
tcgctggagcagcacaatgcaacaaccaatgatttgcatccagatattataaatttggtc
atgcttgagtactacattgaacggcaatgcttgttgaagtgcacaagacagatctttatg
catgccttgtattttgaaactgagtcggaaggagtttctactgtactggaggtggcaaaa
cggttaatttctggtggactcgaatgtaaattactttctatctttgaggacctgctatca
tctaaatacccggatcagatggattttgatctctacactttatgggcagaggaaacactc
atagaggacaacttaatccttgacattcttttccttgtttattgcgagtcgttttgtgct
tgtgacgctgaatgctggaaaagattatgtgcgctatatgagggtattgtaactggatct
tacaatttccagaagctggcgatatcaccagatgctattcgtgccatatatcatgccaaa
gtgcagctgatgctcattctcattcagtctttaaacctggaaagtctccttcagatgatc
catgataacatttctttcaggcagggatcacttagattttcagagatggaagttcaacaa
attgattcaatgatttctagcttcaatgcttttgagtccaaagaattaggccctctgatc
ttagcatgggctttgtttctttgtcttgtttcttctctgccagaaaaagaggaaaataat
aagttgatggagatagatcatattggttatgttcgtcaagctatggaggcttcatctttg
ggatattttcttgacattctagaaagtgatacatttaaatattcagatggtcctctagct
ggttaccgaagtgttataagaacgtttgtttctgcatttattgcatcttatgaaatcaat
atccagtttgaggatgagaacctgaaattgatattggacatactttgcaaaatataccac
ggggaggagtccctatgtgatcagttttgggatagggacagctttattgatggtcctgtc
aggtgtcttcttttcaacctagagggcgaatttccatttagaactattgagcttcttcgc
ttgttatcagccctgagtgaaggtgcatggccgtctgaatgcgtattcaatttcctagac
aagtccactggactgtcgacaccgtttgagattatgaatggctcagtagtggatgctgtt
tcaaagatcgttgaaacacattctcccttgcatgttgctggggttgaaggcttgataatt
cctggaaaatctaggggtcaagtattgagaatgctcgacgacaattgtgctctggtcagc
ctctgccttgctctctacttgtcttctctgcagcatacagtgtctggagttcttgttttg
cttttgcggttggctaaagagttgtatatgcaaaacccagaggaagtagttgttattctt
gacttgctcagtcgattggcgagttttaacacggctatctgttgtactctcatgaaatct
tggaatttctcctgtgatggagactatgttatggggaatgagcagagttattttcgcatt
gacattgtcgagattgtttgtgctgtgctgaaaaacgctcccccaagcataagtggtgcc
ataatgatgtccatgggggtaaacatattgacgaaaatgttaaaatgcaagccgtctcat
gtagctacaatggccatgaagggcaatatctttgatgttgccttgaggacaaatcccttt
gatgttggatccaacaatttatccagtggatcctggttgctctctggaagacttgccaaa
atgcttttgattgattgtgaacagagtgactgctcaatgaccctgtcagtgcttgacttc
acaatgaatctactagagaaaggattagaaaccgataccatccttgcactcatcgttttc
tcacttcagtatgttctcatcaatcacgagttctggaaatataaggtgaaacctgctcgg
tggaaggtgacacagaaggtgcttgaagtcatgaggaaatgtatttcgtctatctcatgc
tgtcccaagctgggggaagtagttcgtgatattatattttctgattcttctatacactct
gcacttttccgaattgtttgtacaacagcaccaaccttagagaaacttcatgtatctcgt
ttatttgacatactggatattgagggtttggagcttgcaatatcctctgggctaaatgtc
ttgctcagcatgatatccactttttcaaagcatccacagggtagttctgtttttcatgaa
gcaattctatcaatgacgacaaagccagtacctgtgatcactgccgccatatcatttata
tcatacttccgtaatgctaatatacaaatggctggcgcaagattgctctctgctttgttt
atggcagatatctcacagtcctatacccacaacaatatgaatcttgggttggatgataag
caggttgcccatttcaggaaatctattaccagcattctttttcagcagtcaccatcgagt
gaggatctcatcgttgctactttgaggttcctaacttctgctgcaagcaatcagcctgct
tttcttgctgctgtcattgcgtcgaaggagtactcaaatactcaagtgcaaaatgccctt
gaacatcagccaaagaaaactgagaatgaatcattagattccttggaagaaagtccttta
tatgcaattttgcagtacctaaaagattctgaagacttattacataggaaaccaaatatg
ttgttatgtttgttgaagtttctaaaggcactttggcaaggtgcacctcagttctcgaag
aacttggaacaattaaaagttgcagatgagttctggaaacatttgacccgttctctggtg
ctcattgctcaccgagacaacatatctgagaagttaactgaaatggatctccaaaacatg
gcctgcgaatgtcaaatcctctccaacgtattggatatactaagctatgagatttttgtg
caaaagaagttgaggcatgctgcatcagttgtcaacagaatatctacatcacctcctaat
ggggcagaaaaaactgagcataatttaaaaaaaaatggaagcctaaaggagactatttca
tcctggtgtaagaattcagttctgagtgacttgatcaaggtctgtgtttcctcagaatat
gatgaaagtagtcatacacgtgccaaggttgctgctggtgcatttgctgttcatgtgatg
gttaaattaagaagtggtgactcagggagcttgtctgtgtcactaattgaaaggatttca
gcattgtcagaaaagttattcaagttaccagctttttcagatttgttgacccagtatact
gagcgtagttacagtggaggacaagagttggagaatctgattctaagtgatctgttttac
cacatccaaggagagcttaatggccgtcagattgacaatagaccatttaaagagttatta
cagtttctgatagattcaagatttctggatgcctataaatatgaaaaggatgatgatctt
cccgccaacgacaagagtgtctacctgtatgatactgttcgcctcaaaatagaccttgga
ttagaaatgtgggatcttcttgcttggaaagagtccaaggatcttgtgaaaactatgctc
ctttctttgcaagatgcaaattcaagaatgttgcactctacttccaagctttcagctttg
cgtgggcttgttactctattgtacatgcgccaaaacaatgctgaagatttgaccgggctg
aagatttctgagcaagtagtttcttcaggcattgaccacatatgtcagtctatccatgcc
tcactggcatctttgactcctgccggcgatgctagtgaagatattgtgctagatattctt
acagctcaagcagagctactgctacttctcctcagatcagttgaaacaaaactttctcag
cctgatcgtgttcttattttaaaggcctcaagctatggtctcaaagtgttgagcggctgt
aggccaactcttgctgctgaaacagctactaggtttttgcttattttgatcctttcagtt
aagctgacttgcaaggattcgggtatgggctattcaaccgaaactgaatcaactgaagtt
tcatctgaagtttcttattcaagtttggggttattacctgttctctgcagcagcattcag
cacccagataattgtatcctatccttggctgccattgactttatactgaaaggtttctca
acccctgctacttggttccccatcatacagaagcatttcccattgccacatattgttcag
aagctccaagatgcagctgcgtccaaaatggttccaatcatattaaaatttcttttgaat
cttgcacgcgtgagacagggtgctgagatgcttctaaatgctggtatcctagcatcacta
agaatgctgttgtctgactttccagatggtgcacctctctctgtaatccaaggtgagagc
atctttgccaattttgacaaaaccgaaaagtctcaacccatctgggggctgagcttggct
gtacttacagcaattatccattctttgggagataactctgcaagtgttgtggattatgtg
atggcatgcatattagttgagaaagcaccttcagttttctattacctaactgcaccagat
ctcccaactaatggtcatgaaaataaaagagcccgtgcattgaaatcaaacacttcctta
gatgagcttaaagccacacaaaatactttggctctaatttgtgtcttggcggagcactca
aattcgtggaagaaaattctgcaaagcatggagtcccagttacgggaaaaaagcatccat
ttgttagccttcattagtcgagcaactcagcaccctggagaatcacctcggagggaagct
cctttatcctgccatcctgtactcaaagaagagcttgagttgttcaagaagccttcgttt
gtaaacagtaaaaagggttggtttgctctatctgctcttggctgcaagtcaaatctcaac
ttggcgctcttgtcctctaaatcaactgctctggtcttgagagatcagtcgaatgacgat
agcaattcatctgatcagacacatttgtcagatttaattgcaatcgagatgtacaagact
gcatttctgctgttgaagtttttatgcacacaaactgaagcagctgccagaaaggcagag
gaggttggttttgttgacattgcaaatttccctgaactgccaatgcccgatattttacat
ggcttgcaggatcaagggattgccatcatcacagaactgtgcgaagccaacaagacaaaa
caggtggcgtcagaaataaaggaagtctgcactttgctgctacaagtgacagtaatggca
ttatacttagagtattctgtcatacaaatttgtggcattaggcctgtattaggccatgtt
gaaacattctccaaggaactacgccttcttattagagcaacggagggccatgtgttcttg
aaagagccactgacaattttgaaacaaattgtagcagttgtgtatccggagttagtacac
caagacgccttgttttga
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