Salvia hispanica (chia): 125188453
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Entry
125188453 CDS
T09851
Name
(RefSeq) nuclear pore complex protein NUP88
KO
K14318
nuclear pore complex protein Nup88
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125188453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125188453
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125188453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
XhlA
MscS_porin
Motif
Other DBs
NCBI-GeneID:
125188453
NCBI-ProteinID:
XP_047941259
LinkDB
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Position
5:complement(4018191..4025139)
Genome browser
AA seq
814 aa
AA seq
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MRFSFDLPEGRQSPAPSPSPSSSTPKSELEWFPLQNHPLFSSATATPAAALDTSGRKPPN
LMAWDGASRLYIWDLETKCLHRLSIRLGEPDPSSILAASPSKVLQAETPVSFEVSKISIN
KNGSAMLLAGTEGLCVMYLYGRSSLAQNTIICRTVSLGSEIYFQRNNFIRILQICWHPYS
DTHLGILSSDSVFRIFDLSTDIGQPEQEYYLQPVEYGSSRNAAAICPVDFSFGGEHLWDK
FSVFILFSDGSTYIICPVVPFASLYKWESILELYNDAHTFGLKSSNSKAVSNSNMAISWL
EATFPELVHQDGGGGQLHIVRAQPFVHMDASVSLQGPLHNMCDGVTEDSDVQKGTCEGRA
VSFHYNLVGKDTILVIARSDGQLQLDALADEIQPVWTMGSAPRLCFTSSDKIAGVAMICE
SFLSSPTVLKLDQTPYSTAWLGQPPPLLRLAIVDLALPIESSSLIGMISDPLLPERTFCI
HAGGIDSIVLHFLPFTNHTTGKEEPIRTPSVNSVLSTCPGDSSSPSPLHGFLALSDSYGS
SWIVGLTSSNDCIVLQMETWNVLLTDAFDKIQENLTTEETTSTKQTGFNTIISKELLNGP
KAVLLPPSAPNLRSVTADSIEGRSMLHQYFKLFHENYVEYAHKVHFELQRHAPQLKKVID
GEHSRLHKMQQKLLEVETKQENLEDRVDRAVKIHSSLEERLQSLRSLPGLQKNPLSKAER
EFKMELDKFTGLELDALHSSIEALSARTKRYTHSLQADSPTQRTQRLMRRGNMVPDDGVS
ELKSLLEKLSLINSENSKKVKLVESALKAREITD
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttctcgttcgacttaccggagggccgtcaatctccggctccttctccttcgccg
tcgagttcgactcccaagtcagagctcgaatggttcccactgcagaaccacccgctcttc
tcctccgccactgctacgcccgccgccgccctcgatacttccggaagaaagccccccaat
ctcatggcctgggatggagcttcgcggctatacatttgggacttggagacgaaatgcctc
caccgcctatcaattcgcttgggcgagccggacccctcttccatcctcgctgcttccccc
tctaaggtgttgcaagcggaaacaccagtcagctttgaggtgagtaagatttctatcaac
aaaaatggctcagctatgctcctggccgggacggagggcctatgtgttatgtacctttat
ggacgctcttcactagcacaaaataccatcatctgtcggaccgtttctcttggttcagag
atttacttccagagaaacaacttcatacgcattctacagatttgctggcacccatacagt
gatacacacttgggaatcctgtcgtctgattctgttttcagaatttttgatctgtctaca
gatattgggcagccagagcaggaatattatttacaaccggtagagtatgggagtagccgt
aatgctgcagcaatttgtccagttgatttctcttttggtggtgaacatttatgggataaa
ttcagtgtttttatcttgtttagtgatggatccacttacataatttgccctgttgttcct
tttgcaagcttgtataaatgggaatctattttggagctttataatgacgctcatacattt
gggctaaaatcatccaattcaaaagctgttagtaattcgaatatggcaatctcatggctg
gaggcaacatttcctgagttagttcatcaagatggaggtggtggacagttgcatattgtt
agagctcagccttttgtccatatggatgcatcagtttcattgcaggggcctctgcataac
atgtgtgatggtgtgactgaagattctgatgttcagaaaggcacatgtgaagggcgtgcg
gtcagttttcattacaatttagttggcaaagacacaattcttgtgattgctcgtagtgat
gggcaattgcaactggatgctttggctgatgaaattcagccagtatggacgatgggtagc
gcacctcgtctttgtttcacctcatcagataagatagctggtgttgctatgatatgtgag
tctttcttgagtagtcctactgttttgaagctagatcagaccccgtattctactgcttgg
ttgggccagccgcctcctttgctgaggttagccattgtggatttagctttgcctatcgaa
agtagttctctgattggcatgattagtgatcctctcttacctgaaagaacattttgtatt
catgctggagggatagattcaatagtcttgcattttctccccttcactaaccacacaact
gggaaggaagagccaattagaactccatctgtgaattctgtacttagtacatgccctggc
gactcatcctccccatcacctcttcatggtttcctggctttatcagattcttatggtagt
tcgtggattgtgggacttacttcttctaatgactgtatagtgctacagatggaaacttgg
aatgtattgcttactgatgcttttgataagatccaagaaaatttaactacagaagagaca
acaagtacaaaacaaacaggttttaacacaataataagcaaagagcttctcaatgggccg
aaggcagttctattgcccccttctgcaccaaatttgcgctctgtaacagctgattctatt
gaaggacgatccatgcttcatcagtatttcaagctgtttcatgaaaattatgtggagtat
gcacacaaggtgcactttgagctccagcgtcatgcgcctcagttgaaaaaagtaattgac
ggagagcattctcggttgcacaagatgcaacagaagctcttggaagttgaaacaaaacag
gaaaatttagaggatcgtgtagatcgtgcagttaagattcacagttccttagaggaacgg
ctacaaagcttgaggagcctgcctggactgcagaaaaacccactttctaaagcggaaaga
gaattcaagatggaactagataaatttactggattggagttggatgcattgcactcttcc
attgaagctctgagtgcaagaacaaaaagatacactcattcgttgcaggctgattcccca
actcaacgaacacaaaggctaatgagaagaggaaatatggttccagatgatggtgtttct
gaactcaagtctttacttgaaaaactctcgctgataaacagcgagaacagcaaaaaggtg
aaactcgttgaatccgcattgaaagccagggaaatcacagattga
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