Salvia hispanica (chia): 125188498
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Entry
125188498 CDS
T09851
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
shis
Salvia hispanica (chia)
Pathway
shis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125188498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125188498
03009 Ribosome biogenesis [BR:
shis03009
]
125188498
04131 Membrane trafficking [BR:
shis04131
]
125188498
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shis04147
]
125188498
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125188498
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125188498
Membrane trafficking [BR:
shis04131
]
SNARE
SNARE associated proteins
Others
125188498
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125188498
Exosome [BR:
shis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125188498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_33
AAA_2
CDC48_2
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
nSTAND3
RNA_helicase
AAA_17
AAA_28
Mg_chelatase
AAA_18
IstB_IS21
ABC_tran
Parvo_NS1
ATPase_2
Viral_helicase1
AAA_7
Vps4_C
NACHT
ResIII
TsaE
NB-ARC
Zeta_toxin
AAA_lid_PRS2_C
DUF815
Sigma54_activ_2
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
125188498
NCBI-ProteinID:
XP_047941315
LinkDB
All DBs
Position
5:23215693..23220182
Genome browser
AA seq
805 aa
AA seq
DB search
MAHQPDSDSKAGKKDFSTAILERKKAPNRLVVDEAVNDDNSVVSLHPATMEKLQLFRGDT
ILLKGKKRKDTVCIALADDTCEEPKIRMNKVVRTNLRVRLGDVVSVHQCPDVKYGKRVHI
LPLDDTIEGLTGDLFDVYLKPYFLEAYRPVRKGDHLLVRGGMRSVEFKVIETDPGEYCVV
APDTEIFCEGEPLRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNCSWE
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAA
DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIF
KACLRKSPLSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRGANP
DSMEEDVEEEVSEIRPSHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADQ
PAGTAAASDPFASSAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggctcaccaacccgactctgattcgaaagctgggaagaaggacttctcgacggcgatc
ttggagaggaaaaaagcccccaatcgcctggttgttgatgaagcggtcaacgatgacaat
tccgtcgtctccctccaccccgccaccatggaaaagctccagcttttccgtggagatact
attttgctcaagggaaagaaaagaaaggatactgtctgcattgcccttgctgacgatact
tgcgaagagccgaaaattaggatgaacaaagttgtgaggacgaacctgagggttcggctt
ggggatgttgtatctgtgcaccagtgcccagatgtgaaatacgggaagcgtgtccacatt
ttgccgttggatgacaccattgaaggtctcactggggatctttttgatgtttacctgaaa
ccctattttctggaagcatatcgcccagtgaggaaaggtgaccatcttctggttagagga
ggaatgagaagcgtggaatttaaagtcattgagactgatcctggggagtattgtgttgtt
gcccctgatactgagattttctgtgaaggggagcctttgaggcgagaggatgaagatagg
ttggatgaggtgggatacgatgatgtagggggtgttaggaagcaaatggcccagattcgt
gaattagtggaattgcctctgaggcatcctcagctcttcaagtctataggtgtcaaacca
cctaaaggaattttgcttttcggacctccaggttcgggaaagaccttgatagctagagct
gttgctaatgaaactggagcgttcttctttttgattaatgggcctgaaattatgtccaag
ttggctggagagagtgaaagcaacctaagaaaagcatttgaggaggccgaaaagaatgcc
ccatcaattatttttattgatgaaattgattccatagcacctaagcgagagaagacacat
ggtgaagttgaaaggaggatcgtttctcagcttctgactctcatggatggattgaaatct
cgtgcccatgtcattgttatgggggcaactaaccgacctaacagcattgacccggctctt
agaaggtttggtagatttgatagagaaatagatattggtgttcctgatgaagttggacgg
ctcgaggtgctgaggattcacaccaagaatatgaaactctccgaggatgttgatttagag
aggatttctaaagacacccatggttatgttggtgctgacctggcagctctctgcactgaa
gcagcgcttcagtgtatcagagagaaaatggatgtcattgatttggaagatgatacaata
gatgctgagatactaaactccatggctgttacaaatgagcacttccacactgctcttgga
acaagcaacccctctgctttacgagagacagttgttgaagtgccgaattgcagctgggaa
gatattggagggctcgaaaatgttaagagagagcttcaggagactgttcaatatcctgtg
gaacatccagaaaagtttgagaaattcggtatgtccccttcaaagggtgttcttttctat
ggtcctcctggatgtggaaaaacactgctagctaaggctattgcaaatgagtgccaagcc
aatttcattagtgtaaaaggacctgaattgcttactatgtggtttggagagagtgaagcc
aatgttcgtgaaatatttgacaaggctagacagtctgctccatgtgtccttttctttgat
gaacttgactccattgctacacagagaggaagcagtgttggagatgctggtggtgccgct
gaccgagttctcaatcagcttctcactgagatggatggcatgaatgccaagaagactgtt
ttcataattggggctactaacagacctgacattattgatccagcacttttacggcctggt
cgccttgaccagttaatatacatccccctgccagatgaagattcacgccatcagattttc
aaagcatgtcttcggaagtcaccactatcgaaggatgttgatctccgagctcttgctaaa
tatactcaaggatttagtggagcagatatcaccgaaatatgccagagggcttgcaaatat
gccataagagagaatattgagaaagatatagagagggagaggagaagaggagcaaatccc
gattcaatggaagaggatgttgaagaagaagtatcagaaatcaggccttcacatttcgag
gagtccatgaaatatgctcgaagaagtgtgagtgatgctgacatacggaaataccaggca
tttgctcagaccttgcagcagtcacgtgggtttggaactgaattccgttttgctgaccaa
ccagctgggactgctgctgcatcggaccccttcgcatcatctgctggtggagctgatgaa
gatgatttgtacagttag
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