Salvia hispanica (chia): 125188573
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Entry
125188573 CDS
T09851
Name
(RefSeq) WD repeat-containing protein LWD1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
shis
Salvia hispanica (chia)
Pathway
shis03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125188573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125188573
03036 Chromosome and associated proteins [BR:
shis03036
]
125188573
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125188573
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
125188573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_Gbeta
Beta-prop_Aladin
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR41
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
125188573
NCBI-ProteinID:
XP_047941464
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Position
5:2849560..2852822
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AA seq
350 aa
AA seq
DB search
MGASSDPNQDGSDEQQRRSEIYTYEAPWHIYAMNWSVRKDKKYRLAIASLLEQYPNRVEI
VQLDDSTGEIRSDSALSFDHPYPPTKLIFVPDKDCHRPDLLASSSDFLRLWQISDSDSSA
ARRVELKSLLNNNRNSEFSGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKEVVDTQLIA
HDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR
YMATIIMDSSKVVVLDIRFPTLPVVELQRHQAGVNAIAWAPHSSCHICTAGDDSQALIWD
LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSNKLQILRL
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagcagcgatccgaaccaagacggatcggacgagcagcagcgccgctccgaa
atctacacctacgaagccccctggcacatctacgccatgaactggagcgtccgcaaggac
aagaagtaccgcctcgccatcgccagcctcctcgagcagtaccctaaccgcgtcgaaatc
gtccagctcgacgactccaccggcgagatccgctccgactccgccctctccttcgaccac
ccctacccccctaccaagctcatcttcgtccccgacaaggactgccaccgccccgatctc
ctcgcctcctcctccgatttcctccgcctctggcagatctccgactccgactcctccgcc
gcccgccgcgtcgagctcaagagcctcctcaacaacaaccgcaacagcgaattctccggc
ccgctcacctccttcgactggaacgaggccgagccgcgccggatcgggacctccagcatc
gacaccacctgcacgatctgggacatcgagaaggaggtcgtcgatacgcagctgatcgcg
cacgataaggaggtctacgacatcgcctggggcggcgttggcgttttcgcctccgtctcc
gccgacggctcggttagggttttcgatctccgcgacaaggagcactcgactataatctac
gagagctccgagccggacacgccgctggtgcggctcggctggaacaagcaggatccgaga
tacatggcgacgatcataatggacagtagcaaggtcgtggtgctggatattcgcttcccg
acgctgccggtggtggagctgcagcggcatcaggccggtgtgaatgcgattgcgtgggcg
ccgcacagctcctgccacatttgcacggcgggggatgattcgcaggcgttgatttgggac
ctctcgtcgatggggcagccggtggagggcggattggacccgattctggcgtacactgcc
ggggcggagattgagcagctgcagtggtcgtcctcgcagccggattgggtggcgattgcg
ttttcgaacaagctacagattctgaggctataa
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