Salvia hispanica (chia): 125188599
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Entry
125188599 CDS
T09851
Name
(RefSeq) protein RAE1-like
KO
K14298
mRNA export factor
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125188599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125188599
03036 Chromosome and associated proteins [BR:
shis03036
]
125188599
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125188599
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125188599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
EIF3I
Beta-prop_ACSF4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
Beta-prop_VPS8
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
125188599
NCBI-ProteinID:
XP_047941499
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Position
5:2343669..2348400
Genome browser
AA seq
348 aa
AA seq
DB search
MSAFGASTANANPNRSAEVASPPSDSVSSLCFSSKANHLVATSWDNQVRCWEVQKQGTTI
TTVPKASISHEQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPVKDLA
WIPEMSLLVTGSWDKTLRYWDLRQQNPTWVQQLPERCYALTVKHPLMVVGTADRNLVIFN
LQNPQTEFKRVMSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDEAQASKNFTFKCHR
DGNDIYSVNSLNFHPVHQTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPITASAFNQDGS
IYAYSVCYDWSKGAENHNPSTAKTNIYLHQPQDAEVKGKPRVGTSNRK
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattcggcgcttcaacggctaacgccaatcctaatcgctcagctgaggtcgcg
tcgcctccgagtgattcagtttcgagcttgtgtttcagttcgaaggccaatcacttggtc
gctacgtcttgggataatcaggtacgatgttgggaggtgcagaaacaaggaaccactatc
accactgttcctaaggcttcgatatcacatgaacaaccggttctctgctcagcttggaag
gatgatggaacaactgtattttctggtggttgtgacaaacaagtcaagatgtggccatta
ctatccggtggacaacctgtaactgtggccatgcacgatgctcctgttaaagatcttgct
tggatcccagaaatgagtcttttagtcacaggaagctgggataagacacttaggtattgg
gatctgagacagcagaatccaacttgggtgcagcagcttcctgagcggtgctatgcgctt
actgttaaacatccccttatggttgttggcactgcggataggaatcttgtcattttcaac
ctacagaaccctcagacagagttcaagagagtcatgtcaccattgaagtaccagactagg
tgtttagctgcattcccagatcagcaaggcttcttagttggctcaattgaaggcagagtt
ggggtacaccaccttgatgaggcacaagcaagtaaaaactttacttttaaatgtcacaga
gatggcaatgacatttactctgtcaactcactgaattttcatcctgtgcaccagacattt
gccactgctggatctgatggcgcctttaacttttgggacaaagatagcaaacagaggctt
aaggctatgctgaggtgcagtcagccgataactgccagtgctttcaaccaagatgggtct
atatatgcgtattcggtttgttatgactggagcaaaggtgctgaaaatcacaacccatca
acagcaaagaccaatatttacctacaccagccccaggatgccgaggtcaagggcaaaccc
cgagtcggaacaagcaaccggaagtga
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