Salvia hispanica (chia): 125188602
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Entry
125188602 CDS
T09851
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125188602
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125188602
microRNA pathway
RISC loading complex
125188602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
PAZ
IstB_IS21
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125188602
NCBI-ProteinID:
XP_047941504
LinkDB
All DBs
Position
5:17350825..17372416
Genome browser
AA seq
1566 aa
AA seq
DB search
MEIHHRAIDHEEMNLRQQEKDPRRIARGYQMELCKKALEENIIVCLGTGAGKTHIAVLVI
YEMRHLFKKPQDSVCIFLAPITALVQQQAKVIEESIDVKVGIYGGRRTHARSHEDWEKVI
KEYEVLVMTPELMLHYLAHCFIKMEQIALLIFDECHHAQGDSNHQYAQIMKIFYPVDLVK
CPRIFGMTASPKLGKGGSVDGLEAIMHSKVCTIEDKDDVEQFVTSPKSIAYEYGSTEKSL
LYPYMVYTTKLEEIKDKCMLALGDTEVDQNTRKLLQKLHSDVIYFLKNLGIRGALQVTYI
SLAGDNNETAELVDAQYSCSDCDLRKNYLHEVSSILDDCIRGGLEADITCTEVLEEPFFS
EKILRLIEILSRFRLQPNMNCIIFVNRIVTARSLSGILQNLKILSSWKCDFLVGIRSGHM
SQKHMDIILEKFRSGQLNLLVATKVGEEGLDIHTCSLVIRFDLPETLASFIQSRGRARMP
QSEYAFLVDRSNLNEVKLIQQFVKEEALMNLEISCRQSRVQVTNFRERTYKVEATGATIS
SVMSVPLLHSYCSSLPHDEYSNPKLQFFYHDHPDGNICTLVLPANAPFHQIGSAPQPSKE
AAKRDACLKACQALHEVGALTDYLLPEQDVNYEDLDLTDSDNEDCVESQFELHQMLVPAA
LRVPWGQVDNFCTFSCYYVKFNPIPADRTYRKFGLFVKESLPEEAGNLSFDLCLDKGRTV
KTQLIPSGGSTFDKAEIALAETFQKLFLKVLVDRHEFKEKYVSLEDNNVPESNLTTFYLL
LPVVEHENERFSVDWTLISRCLSSLIFKHVGSDVKDNVCEVSGYLHLASGSTSFNATLSS
LVYLPCKDTFFFVSDILTEKNAYDSYSDSENHVEHYSALYDIHLKYPHQPLLKAKPLFTL
KNLLRKKNRSGEWREKEEYVVHLPPELCELKIVGFSKDIGSSLSLLPSIMHRLESFLVAN
ELKEKLSASFPEGAEVTTDRILEAITSEGCNENFSLERLELLGDAFLKFAVGRYLFLKHD
ALDEGQLTRKRSKLTTNHNLFKLAKLKNLQVYIRDQTLEPCNFFAFGRPCPLTCNKKTEE
SIHCQFSVKKNGAKFKVRCSKFHHWLRKKTIADVVESLTGAFIVDSGFKAAIAFLNWIGI
KVDLSPSQMDAICSMSRAFLPLANLRDVDVIEKFLGHEFTHKGLLIQAFVHPSFNNFGGC
YQRLEYLGDAVLDYVVTSYLYTTYPELKPGQLTDLRSMSVSNLSFAYVAGRLSMNKFVIC
DSSALRESMSKFVNEIGNFSSEAEDIEERTYPKVLGDLVESCVGAIFLDTGFDLNSSWKI
VLSLLDPVVNTSRMQFNPLRELIDLCQLYNLDLHFSKVKKNGEFVVEAKVDNAEVSETAC
ASNVSGKTAKKIAAREMIRRLKALGYSSKSKPLKDVVRDSRRLEAKLIGYDEVPSIPKLV
EVPSTPKLVEVPLALELHPQDKGCGTDSPAITVYNGSGSTTSSVNARSYLNNICAAKHWS
TPVFDCIKETGPHHIKQFVYKVQLQIVGKLNEELECIGEPRLKKKDAAESAAEGALWYLK
SKGHIR
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atggagatccaccaccgtgccattgatcacgaggagatgaatctccggcagcaggagaaa
gacccgaggagaattgctagagggtaccagatggaactatgtaagaaagcattagaggaa
aacatcatcgtgtgtttgggaacaggtgctggaaaaactcatatagctgttctagtaata
tatgagatgagacacctttttaagaagccccaagacagtgtgtgcatttttcttgcaccc
ataactgctttggttcaacagcaagccaaggtgatagaagaatcaattgatgtcaaagtc
gggatctatggtgggcgtaggactcatgcacgaagccatgaagactgggaaaaagtaatt
aaggaatacgaggtgcttgttatgacgcctgagctaatgttgcactatctagctcactgc
ttcatcaagatggaacagattgctctcctcatttttgatgaatgccatcatgctcaagga
gattccaatcatcagtatgctcaaatcatgaagatcttctatccagtggatctcgtcaaa
tgccctcgtatttttggcatgactgcatcaccgaagttggggaaaggaggttcagttgat
ggtctcgaggcaataatgcactcaaaggtgtgtactattgaagataaggatgatgtggaa
caatttgttacatcccctaaatcaattgcgtacgagtacggttctactgagaagagcctc
ttgtacccttacatggtttacactacaaaacttgaggagataaaagacaagtgtatgttg
gcacttggggacaccgaggttgatcagaataccaggaagttgctccaaaagctgcattcg
gatgtaatatattttctgaaaaatcttggaattcgaggagcattgcaggtaacatacatt
tctctagctggtgacaataatgagactgctgaactggtggatgcgcaatacagctgcagt
gattgtgacttacggaaaaattatttgcatgaagtttcctctatcctagatgattgcatt
agaggtggcttggaagctgatattacttgtactgaggttttagaggagccgtttttctca
gaaaagatattacggcttattgaaatactctccagatttaggttacagccaaatatgaac
tgcataatatttgtcaatagaattgtcactgcaagatccctctctgggatccttcaaaat
ctaaagattttatcttcttggaagtgtgatttcctcgtaggaattcgctcaggacacatg
tcacaaaagcatatggatatcattcttgagaagttccgttctggtcagctaaacctattg
gttgctaccaaagtgggtgaagagggacttgatattcacacctgttctcttgtaatacgg
tttgatcttccagagacacttgctagctttatacaatcaagaggccgtgcccgcatgccc
cagtctgagtatgcatttttagtggacaggagcaaccttaatgaagtcaaattaattcag
cagtttgtgaaagaggaagctctgatgaacttagaaatttcctgccgacaatctcgtgtg
caagtaaccaatttcagggagagaacctataaagtggaagccactggtgcaactatcagt
tctgtaatgagtgttcccttgctgcatagctattgctcatcgcttccacatgacgagtat
tccaatccaaagctacagttcttctaccatgatcatccagatggaaatatttgcacctta
gttctcccagccaatgctccatttcaccagattggcagcgcaccacaaccttcaaaggag
gcagctaagagagatgcatgcctaaaagcgtgccaagcattgcatgaagttggagcactg
actgattatctattgccagagcaagatgttaattatgaggatctggacttaactgattct
gacaatgaggattgtgtggaatcacagtttgaactccatcagatgcttgttcctgctgca
ctcagagtaccatggggacaagtggacaatttctgtacttttagttgctattacgtaaag
ttcaatcctattccagcagataggacatacagaaagtttggtctttttgtgaaagagtca
cttccagaagaggctggtaatttgagctttgatctttgtctggataagggtagaacggtg
aagacacagcttattccttctggaggttctacatttgataaagctgagattgcattagca
gagacattccagaagctatttctcaaggttcttgtggaccggcacgaatttaaagaaaaa
tatgtgtctctagaagataataatgtccccgagtctaacttgacaaccttctacctattg
cttcctgttgtggagcacgagaacgaaagattttccgtagactggacactgataagtaga
tgtttgtcttcactgattttcaaacatgtgggaagtgatgtgaaagataatgtctgtgaa
gtttcaggttacttgcatcttgccagtggctccacaagtttcaatgctactttgagtagt
ttggtgtatctgccatgcaaagatacatttttctttgtttcagatatcttgacagagaaa
aatgcgtatgattcatatagtgactcagaaaatcatgtggagcactattcggcattgtat
gatattcatctaaagtatccacatcaacctcttttaaaagcaaaaccactttttaccttg
aagaatttgctgaggaagaaaaatcgatcaggagaatggcgagaaaaagaggaatatgtt
gtccacttgcctcctgaactttgtgagttgaaaattgttggtttttctaaagatatcgga
agctcattgtccctattaccatcaatcatgcaccgacttgaaagctttcttgtggccaat
gaactgaaggaaaagttaagcgcttcattccctgagggggcagaagtaactacggataga
attcttgaagctataacgagtgaaggatgtaatgagaacttttctcttgaaaggctggaa
ttgcttggtgatgcatttctcaagttcgcagttggtagatatctttttcttaagcatgat
gctctagatgagggccagctaacaagaaagcggtcaaaactaacaaccaatcataattta
ttcaagctagcaaagctgaaaaatttacaggtatatatacgtgatcaaacacttgagcct
tgcaatttttttgcatttggtcgtccttgcccactaacttgcaataagaagactgaggaa
agtatacactgtcaatttagtgtcaagaaaaatggggccaaattcaaagttagatgcagc
aaatttcatcactggttgcgtaagaagacaattgcagatgttgttgagtcactcactgga
gcctttatcgttgatagtggcttcaaggcagcaattgcatttcttaattggataggaata
aaagtagatctttcaccttcacaaatggatgcaatctgctctatgagtagggcctttctg
cctcttgcgaatttgcgtgatgtcgatgtaatagaaaaatttttgggacatgagtttacc
cacaaagggctgctcattcaggcctttgtacatccgtctttcaataattttggaggttgc
tatcagagacttgaatatcttggcgatgccgtgttggattatgtggtcacatcatacctg
tatacgacatatccagaattgaaacctggtcagttaactgatttgagatctatgtcagtg
agcaacctttccttcgcttatgtagcggggcgcctgtccatgaacaaatttgttatatgc
gactctagtgctctccgtgaatcaatgagtaaatttgtcaatgaaattgggaatttctca
tctgaggcagaggatatagaagagagaacttacccaaaggttcttggtgacttggtggag
tcctgtgtgggtgcaatatttcttgacacggggtttgatttgaactcttcgtggaagatt
gtgttgtctctccttgatcctgttgttaacacttccaggatgcagttcaatccccttagg
gaacttatagatctttgtcaattatataacttggatttacatttttctaaagtgaagaaa
aatggtgaattcgtggttgaagctaaagttgacaatgctgaagtttctgaaactgcttgt
gcatctaatgtaagtgggaaaacagcaaagaaaattgctgcaagagaaatgataagacgt
ttgaaggcacttggttacagctcgaagtcaaaaccactgaaagatgtggttagagatagt
aggaggctggaagcaaagttgattggatacgatgaagttccttcaatacctaaattggtg
gaagtgccttcaacgcctaaactggtggaagtgcctcttgcactggagcttcatccccaa
gacaaaggatgcggcacggattctcctgctatcactgtatataatggctcaggcagcact
acttcatctgtaaatgcgaggtcttatctcaacaacatatgtgccgctaagcactggagc
acccctgtttttgattgcatcaaagaaacaggaccgcaccatataaaacagtttgtgtac
aaggtccagctgcaaattgtgggaaagctgaacgaagagcttgagtgtatcggagaaccg
cggttaaaaaagaaagatgccgctgagagcgcagcagaaggggccctgtggtaccttaaa
agcaaagggcatatacgatag
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