Salvia hispanica (chia): 125188714
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Entry
125188714 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125188714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125188714
03012 Translation factors [BR:
shis03012
]
125188714
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125188714
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125188714
Translation factors [BR:
shis03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125188714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_16
AAA_19
ATPase
T2SSE
PhoH
ABC_tran
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
125188714
NCBI-ProteinID:
XP_047941680
LinkDB
All DBs
Position
5:complement(25784684..25798327)
Genome browser
AA seq
1159 aa
AA seq
DB search
MHSRLKALLARAAIKSASLYSPSRLRNSRVVPFGDYTTVAYVVGNYVCSKHQSLSRQPVL
SRRRFCSYAAEQFSDDEYECDYENHPPSSSVANIDEWKWKLSMLLQNDKDQEIISRDKRD
KRDFEQISNLAKRMGLYCQLYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVES
LLQEHLDRTSLNSKKACQISNEIESTNPVENVDSAEHADPFLDASVMEKVLQRRSLRLRN
MQRTWQESPEGRRMLDFRKSLPAFREKERLLQAIARNQVVVISGETGCGKTTQLPQYILE
ANIESGRGAFCNIICTQPRRISAMTVAERVSAERGEPLGESIGYKVRLEGMKGKNTHLLF
CTSGILLRRLLSDRNLDGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATL
NADLFSNYFGGAPMIHIPGFTYPVRVCFLEDILEMTGYKITSFNQIDDYGQEKLWKTQKQ
LAPRKRKNQITSLVEEAMSKAKFENYSSRVQESLSCWIPDSIGFNLLEAVLCHITRKERP
GAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNVRKI
VLATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQ
PGECYHLYPQCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESIGDFISASLQPPEPLAV
QNAVDFLKMIGALDENENLTHLGKFLSVLPVDPKLGKMLIMGAIYCCFDPILTIVAGLSV
RDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSLQ
TLQAIHSLRKQFTYILKDAGLLDTAGSINNRLSHNQSLVRAVICSGLFPGIVSVVPRETT
MSFKTMDDGPVLLYANSVNARYQTIQYPWLVFGEKVKVNTVFIRDSTGVSDSVLILFGGK
LECGATGGHLKMLEGYVEFFMDPSLAECYLKLKEEADKLLIQKLGHPSMDIHKEGKYLML
AVQELVSGDQCEGRFVFGRDSKKPRESCDKERFTKDGTNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKKNKALAEKDAAIEALAWLTQTSENNHVEDVNSPPDV
TDNMLKLLGRRRRSKRNPR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcattcccggctaaaggcgttgcttgcacgcgccgccataaaatccgcctccctatat
tctccttcacgtttgcggaactcccgagttgtgcctttcggtgactataccaccgttgcc
tatgttgttgggaattatgtttgctccaaacaccaaagcttgagtcgccaacctgttcta
tcgcggcgtcggttctgtagctacgccgctgagcagttctccgacgatgaatatgaatgc
gattacgaaaaccacccaccgtcatcatcagtggcgaatattgatgagtggaaatggaaa
ctcagcatgctgttacaaaatgataaagatcaagagattatttctcgtgataaaagagat
aaacgggactttgaacaaatatccaaccttgccaaacggatggggctttactgtcagctg
tatgggaaagtgatcgtggccagtaaggttcctcttcccaactacagaccagatctggat
gataagcggcctcagagggaggttgtcatcccattgagcttgcaaagaagggttgagagt
ttgcttcaggaacatcttgacagaacaagcttaaactccaaaaaggcctgtcagatttca
aatgagattgagtctaccaatccagttgaaaatgtcgattcagctgaacacgcagatccg
tttctcgatgcttctgtcatggagaaggttttgcagagacggagcttgcgattgcgtaat
atgcaaagaacttggcaggaatcccctgaaggaagacgaatgctggattttaggaaatcc
ctccctgcatttagggagaaggagaggctccttcaagcaattgcaaggaatcaggttgtg
gtgatttctggagagactggttgtggtaagaccacacaactccctcagtatattttggag
gcaaatatagagtctggcaggggagcgttttgtaacataatctgtacacagccccgaaga
atatccgcaatgactgttgcagaaagagtttctgcagagaggggagagcctcttggtgaa
tcaatcggatataaagtgcgattagagggaatgaaagggaagaacacacatttgcttttc
tgtaccagtggaattttgctccgaaggctcttgagtgatagaaacctggatggtgtaact
catgtttttgttgatgaaattcatgagcgaggcatgaatgaagatttcttgttgattgtc
ttgaaggatcttcttccacgacgaccagatttgagattaatcttgatgagtgccactctg
aatgctgatctattttctaattattttggtggagcacctatgattcatattcctggtttc
acttatcctgtaagagtatgttttctggaagatatactggaaatgacgggatataagata
acttcgttcaaccaaatagatgattatggccaagagaagctttggaagacacaaaaacaa
ctagctccacggaaaagaaaaaatcaaattacctctcttgttgaggaagctatgagtaaa
gcaaaatttgagaactatagctctagagtacaagagtctttatcgtgctggatacccgac
tctattgggttcaatctcttagaggctgtgttgtgccatataactcgcaaggaacgccct
ggggctgtgttggtatttatgactgggtgggaggatattagttgtttgagggatcagtta
aaagctcatcctctcttaggggatccaaatagggtccttctgcttacatgccatggctca
atggcaacttctgaacagaaactcatatttgagaggccacctcccaatgtacggaaaata
gtgcttgctacgaatatggctgaggcaagtattacaatcaatgacatagttttcgttgtt
gattgtggaaaagcaaaagagactacttatgatgctctaaataacacaccgtgtctacta
ccttcatggatatcccaagcttctgctcggcaaagaaggggtagggctggccgtgtacag
ccaggcgagtgctaccacctgtatccacaatgtgtatatgaagcttttgctgaatatcaa
ctccctgaacttttaagaactccattgaactctctctgcttgcaaattaaaagcttacaa
gtcgaaagtattggggattttatatctgcttctcttcagccgcctgaaccactggctgtt
caaaatgctgttgattttttgaagatgattggtgctttggatgaaaatgagaaccttact
catcttggaaagttcttgtctgtgcttccggtggatcctaagctggggaaaatgctaatc
atgggtgctatctattgctgctttgaccctatactgacaattgttgctggtctcagtgtc
agggatccttttcttttgcctcaagataaaaaggatttagctggaacagctaagtcgaga
ttctcagcaaaggactatagtgatcatatggcacttgttcgtgcatatgaaggatggaag
gatgctgaaagagaaggatcagcatacgagtattgttggagaaacttcctctctctccaa
actcttcaagctatccattctcttcgtaaacaattcacttacatcttgaaagatgccggg
ttgctagatacagctgggtcaattaataacagattaagtcacaatcaatcattggttcgt
gctgtaatatgttctggcctatttcctggcattgtgtctgtagtgcctcgtgagactaca
atgtctttcaaaacaatggatgatgggcctgtcttgctctatgcgaattctgtgaatgca
cggtaccaaacgatacaatacccctggttggtatttggtgagaaggtgaaagtcaatact
gttttcatacgtgattcaactggagtatctgattctgttttgatcctgtttggtggtaaa
ctggagtgtggtgctacgggaggacatctgaaaatgttggagggatatgttgaatttttc
atggacccaagcttggcagagtgctatctgaaactcaaggaggaggcagataaactatta
atacagaagcttggacatcccagcatggacattcacaaggaaggcaagtacctaatgctt
gctgttcaggagttggtgtcaggcgaccagtgtgaagggaggtttgtctttggtcgtgat
agcaagaaacccagagaatcctgcgataaagagaggtttacgaaagacggaacgaatcca
aagagcttgcttcagacactattgatgagagctggccactcacctcccaagtacaaaacc
aagcatctcaagacaaatgaattccgggctctagttgagttcaagggcatgcagtttgtg
gggaaaccaaagaaaaataaggccctagcagagaaagatgctgctatagaagcattggca
tggttaacccaaacatctgagaacaatcatgtcgaagatgtcaattctccgcctgatgtc
accgacaacatgttgaaacttcttggcaggcggaggaggtcaaagcgcaatccacgttaa
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