Salvia hispanica (chia): 125188912
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Entry
125188912 CDS
T09851
Name
(RefSeq) autophagy-related protein 18b isoform X1
KO
K17908
autophagy-related protein 18
Organism
shis
Salvia hispanica (chia)
Pathway
shis04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
125188912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125188912
03029 Mitochondrial biogenesis [BR:
shis03029
]
125188912
Membrane trafficking [BR:
shis04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
125188912
Mitochondrial biogenesis [BR:
shis03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125188912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_IFT80_2nd
WDR90_beta-prop_4th
EIF3I
Ge1_WD40
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
125188912
NCBI-ProteinID:
XP_047941968
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Position
5:complement(6011876..6016458)
Genome browser
AA seq
359 aa
AA seq
DB search
MANQSSAHPILCASFNQDNSCFAIGTKDGFKIFDCDTGRLLYERAIGAFVIVEMLYRTNL
LAIVGAGEQPSLSPRRLCLFNIVNGTSLRELNFLTSILAVRMDRKRLIVLFKEQTYIYDV
NSLEKKQIIDTVPNVQGLCAFSACVDNPYLALPASTTKGSLLVYNVVDLQSHCEIDAHRS
PLIAMAFSSNGTYIATASEHGTIIRVHLISDATKSYSFRRGTYSSTIFSLSFGPSADLPD
ILLATSSSGSVHIFSLGFDLNERKSNSLLGSIIPGSVSDALDPAHHLVFHHAFSAGVRSN
AVVQKIEKASGSSNPEPVVLRATISMISFSGYYQEYSLRINNKNEATWTLERRFKAIAE
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccaatcatctgctcatccgattctctgcgcttccttcaaccaagacaacagc
tgctttgcaattggaaccaaagacggcttcaaaatcttcgactgtgataccggaaggctc
ctctatgaacgagctattggtgcattcgtcattgttgaaatgctatacaggacaaatctt
ctcgccatagttggggctggtgaacagccttctttgtcaccaaggagattatgtttgttc
aatatcgttaatggaacttcactcagagaactcaacttcttgacttctattctcgctgtt
cgtatggataggaaaagattgatagttttgtttaaagagcaaacctacatctatgatgtt
aacagcttggaaaaaaagcagattattgatacagtgcctaatgtacaaggactttgtgca
ttttctgcttgcgtggataatccctatttagctcttcccgctagtacaacaaaagggtct
ttgctagtctacaatgtagtggatctgcagtcacactgtgagatagacgcccatcgctcg
cccctaattgccatggctttttcttcaaatgggacgtatatagctacagcatctgaacac
ggaactataatcagagttcatctaatctctgatgcaactaagtcatacagtttccgtagg
ggtacatattcgtcgacgatcttttccctgtcatttgggccttcagctgatcttccagat
attcttcttgctacaagctcttcaggttctgttcacattttctccctgggctttgatctt
aatgaaagaaagtcaaacagccttcttgggtcaataattcctggttctgttagcgatgca
ctggatcctgctcatcatcttgtattccatcatgctttctcagctggagtcagaagtaat
gctgtagttcagaagatagagaaagccagtggttcatcaaatcccgaacctgttgtgttg
agagccaccatatcaatgattagcttcagtggatactatcaagaatatagtttgagaata
aacaacaaaaacgaagctacatggacattggagcgcaggttcaaagctattgcagaataa
DBGET
integrated database retrieval system
