KEGG   Salvia hispanica (chia): 125188970
Entry
125188970         CDS       T09851                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
shis  Salvia hispanica (chia)
Pathway
shis03082  ATP-dependent chromatin remodeling
shis03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125188970
   03083 Polycomb repressive complex
    125188970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:shis03036]
    125188970
Enzymes [BR:shis01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     125188970
Chromosome and associated proteins [BR:shis03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     125188970
   HDAC complexes
    Sin3A-HDAC complex
     125188970
    BRAF-HDAC complex
     125188970
    REST complex
     125188970
    SHIP complex
     125188970
    MiDAC complex
     125188970
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     125188970
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125188970
  Chromatin remodeling factors
   NuRD complex
    125188970
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 125188970
NCBI-ProteinID: XP_047942061
LinkDB
Position
5:8612375..8617574
AA seq 469 aa
MDSDGGASLPSVCPDARKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRR
MEISRPFPAAFEDIRRFHSPEYVEFLSSVAPDTLLDHTHARQLRRFNVGEDCPVFDGLFE
FCQASAGGSIGAAVKLNRQDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR
RVLYVDIDIHHGDGVEEAFYVTDRVMTVSFHKFGDFFPGTGHIKDVGVASGKYYALNVPL
NDGLNDDNFRSLFRPIMQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVDVEPDNKLPYNEYYEYFGPDYTLHVEPS
NMENLNTLRDLEKIRNMLLDQISKLQHAPSTQFQTMPPTTEVPEERDEDMEVRPKPRIWN
GEHDYESDEDEIDKPSMRSLNSEDTFGENIDIRDGSDTIKTEDTSDEQR
NT seq 1410 nt   +upstreamnt  +downstreamnt
atggattccgacggtggcgcgtcgctgccatctgtctgccccgacgcgcggaagcggcgc
gtgtcctacttctacgagccaacaatcggcgactactactacggccagggccatccgatg
aaaccccaccgcatccgcatggcacacaatctgatcgtccactacggcctccaccgccgc
atggagatcagccgccccttccccgccgccttcgaagacatccgccgcttccactcgccg
gagtacgtcgagttcctctcctccgtcgcgcccgacactctcctcgatcacacgcacgcg
cgtcagctcaggcgcttcaacgtgggcgaggactgccccgtattcgacggcttgtttgag
ttctgtcaggcctccgctggcggctccattggcgcggccgtcaagctcaacaggcaggat
gcggatatcgcaattaattgggccgggggtttgcaccatgcgaagaagagcgaggcttcg
gggttttgctatgttaatgatattgttttggggattctcgagctgctgaaagttcacagg
cgggtactttacgtggacattgatattcaccatggagatggggttgaggaagccttttat
gttactgatcgtgttatgacagtgtctttccataaatttggagacttttttcctggaact
gggcatattaaagacgttggagtggcctctggaaagtactatgctcttaatgtcccactg
aatgatggattaaatgatgacaacttccgaagcttattccgtccaataatgcagaaagta
atggaggtctatcagccagatgctgttgttcttcagtgtggggccgattcattgtctggt
gatcggttaggttgctttaatttgtctgtgaaaggccatgcagactgtcttcggtttttg
aggtcattcaatgttcctcttatggttttgggcgggggagggtatacaatcagaaatgtt
gcccggtgctggtgctacgagactgccgtggctgtagatgtggagccagataacaagttg
ccgtacaatgaatattacgagtattttggcccagattatactcttcatgtggaaccaagt
aatatggaaaacttgaatacactgagggatttggagaaaatcaggaacatgctactggat
caaatttctaaactgcagcatgcacccagcacccagtttcaaacaatgcctccaaccaca
gaagttccagaagagagagacgaagacatggaagtgagacctaaaccccgcatatggaat
ggagagcatgattacgagtctgatgaggatgagattgacaagccttcaatgcgaagtttg
aatagcgaagatacatttggagaaaatatagatataagggatggttctgacacaatcaag
accgaggatacatcggatgaacaaagatga

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