Salvia hispanica (chia): 125189014
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Entry
125189014 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125189014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125189014
03009 Ribosome biogenesis [BR:
shis03009
]
125189014
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125189014
Spliceosome [BR:
shis03041
]
Complex A
U1 snRNP components
U1 related factors
125189014
Complex B
125189014
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Helicases
125189014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125189014
NCBI-ProteinID:
XP_047942136
LinkDB
All DBs
Position
5:complement(22340128..22344010)
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AA seq
621 aa
AA seq
DB search
MFSNHDSRLHDAGSYRQRRVDLVGPPPMMSPPPMPGGAPPSYGRGGPHVAPPFMVGGARS
GYQIDHGAGRGFGAGYGSGFTDRGRGGGGGGFGGRGHSYNGVGDRGGHEGGRGGHFSGRS
FDHGRGGGFSGGRGGRGGRSKGDDLDNISLPKPDFSGLIPFKKDFYVESPSVRAMTEQEV
MMYRARREITVEGHDVPKPIRMFEEASFPGYCLEVIARLGFVEPTPIQSQGWPMALRGRD
LIGIAETGSGKTLSYLLPAFVHVSAQPRLAQGDGPIVLVLAPTRELAIQIQEEALKFGSV
ANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM
LDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSQELKANQSI
HQIVEVMTDLEKYNRLIRLLKEVMDGSKILIFVETKKGCDQVTRQLRMDGWPALSIHGDK
NQDERDWVLAEFKSSRTPIMIATDVAARGLDVKDIKVVVNYDFPSNLEDYVHRIGRTGRA
GATGTAFSFFTHANVKHARELIKILQQAGQAVPPQLAALSRTAGNDTGGSGRNFRSRGRG
GGGFGNRSGSNVIPIGGRRPY
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaaccatgattctagactccacgacgccggatcttaccgacagcgccgagtt
gatttagttgggccgccaccgatgatgagtccaccccctatgccaggtggtgctccgccc
agctatggccgcggaggtcctcatgtggcacctccgtttatggtgggtggtgctaggagt
gggtatcagattgatcatggtgctggaagagggtttggggctggttatggtagtggtttt
actgaccgaggtagaggtggaggtgggggagggttcggtggtagaggacatagctataac
ggcgtaggagataggggtggccatgaaggtgggagaggaggtcatttctcaggaaggagt
tttgatcatggtcgtggaggtggttttagtgggggtcgtggtggcagaggaggtaggtcg
aagggggatgacttggacaacatttcgcttcctaaacccgattttagtgggttgattccc
tttaaaaaggatttttatgtggagagcccatctgttagggcaatgactgagcaggaggtg
atgatgtatcgtgcacgtcgtgagattactgttgaaggacacgatgtccccaaacctatc
cggatgtttgaagaagcaagtttccctggttactgccttgaggtgattgccagactgggg
tttgttgagccaacgcctattcaatcacaaggatggcccatggcattaagaggtcgagat
cttataggcattgctgagacgggttctggaaaaactttgtcgtatttgctgcctgctttt
gttcatgttagtgctcagcccaggttggctcaaggtgatggccccatcgtactagtccta
gcacctactagagaattagctattcagattcaagaagaagctttgaagttcggatcagtt
gctaatataagaagtacttgtatatacggcggtgctccaaaggggccacaaattcgtgat
cttaaaagaggagttgaaattgtcatagctacacctggtagattgattgatatgttggaa
gctcagcacactaacttgcgaagagtgacttaccttgtgctggatgaggccgaccgtatg
ctagacatgggatttgaaccccaaatcaggaaaattgtttctcagattcgcccagataga
cagaccctgtactggagtgccacatggcctagggaggtggaaactctggcaagacagttc
ctacgcaacgcttacaaggtcatcattggatctcaagaactgaaagcaaatcaatctata
catcaaattgttgaagttatgactgatttggagaaatataataggttgatcagattgctg
aaagaagtaatggatgggagtaaaattttaatttttgtggagactaaaaagggatgtgat
caggttacaagacaactaagaatggatggatggccagctctgtccatacatggtgacaaa
aaccaggacgaaagggattgggttctagcagagtttaaaagtagcagaactcctataatg
attgctactgatgttgctgctcgtggccttgatgtgaaggacattaaagtcgtagtcaac
tacgatttcccttcgaatttggaggattatgtccataggattggccgaactggccgtgca
ggagccacgggaactgctttctcatttttcactcatgcaaatgtgaagcatgctagagaa
ctcatcaagattctgcaacaagctgggcaggccgtgccgcctcaacttgctgctttgtca
cgaactgctggaaatgatacgggaggatcggggcgcaacttccgatcccgaggccgagga
ggcggcggctttggcaaccgttcggggtctaatgtgatacctataggtggaagaaggcct
tattag
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