Salvia hispanica (chia): 125189021
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Entry
125189021 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125189021
KO
K14315
nucleoporin NDC1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125189021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125189021
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125189021
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
DUF3079
Motif
Other DBs
NCBI-GeneID:
125189021
NCBI-ProteinID:
XP_047942141
LinkDB
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Position
5:21267737..21270939
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AA seq
563 aa
AA seq
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MSISAAIHRTLFKDKDGGGGGSGGSGALSAIIRHRFLSFLIWQSLQSTLILFLSKTLLLS
PFTKYPFSPIFLSLLYFLCFHLSLFVFSVSLFFVSSPHPLQFASPLEISLSFIHLIFVSG
GEQSLLRTRVRVSLSFVLFVCLCAVAGAVSAISVCWGCDAYYDADSGSIRVGVLGFRGFV
IGLIYGLHYVYKQRWVFRFPIIQRPPFFSYKMGLPLSIRQALRFSAVGFALSGILSFFLP
NEYKSQGSVGKFVVEQIVFYLGSFVVVLCWELSHHVHQVLHTKRFVFAPPKGSAAAETNP
SEPLLATIEESTPNSLLQYLAYLDLCMVCENSVDSWRRAAFFEETGETYRRVIAACLRPL
EHFTLKLAEGLECSSADKSMQLSDQLTSPTERLAVLKLNVSFFDAQLCAWCARVVASLTS
RSRKEDKFGVAQLSGSNAAVISTLLSSLLAVEALMGKKTNVQSAHLMGPAGIKWATVNTG
RRESTAGAMGKIRGSPLYAKAYSMADILKTSIYCIASAFQNEMLGSGKAGLLEKEWIISS
KPLYGTQELLLHKLRLFLDHQAN
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatctccgccgccatccaccgcactctcttcaaagacaaggacggcggcggcggt
ggcagtggaggcagtggagctctctccgccatcatcaggcaccgcttcctcagcttctta
atttggcaatcgctccaatcaaccctcatactcttcctctccaaaacccttcttctttcc
ccctttactaagtacccattttcccccatttttctatccctactctacttcctttgcttc
cacttgtctctcttcgtattctccgtctccctcttcttcgtttcttctccgcatcctctg
cagttcgcctcccctctcgaaatctcgctttcgtttattcacctaatatttgtttccgga
ggggagcagagcttgctgaggacgagggtcagagtgtcgttgagcttcgttctgtttgtg
tgcctctgtgctgtggccggcgcggtttcggcgatttctgtgtgctggggctgtgatgct
tattatgatgctgattcgggttcgattagggttggtgttttggggtttaggggtttcgtg
atcggattgatttatggcttgcattatgtgtataagcaacggtgggttttcaggtttccg
ataattcagcgccctccgttcttcagctacaaaatggggcttcccttgtctattagacag
gctttaaggttttctgctgttggctttgcactatctgggatactatcttttttcctgcct
aatgagtacaagagtcaaggttcagttggaaagtttgttgttgagcagattgtgttttat
cttgggagttttgtagtagttctttgctgggaactaagccaccatgtgcatcaggttctg
cataccaagagatttgtatttgcgcccccaaaaggatcagcagcagcagaaacaaatcca
agtgagccgctcctggccacaattgaagaaagcacccctaattcacttttgcaatatctt
gcttatcttgatctctgcatggtgtgtgaaaatagtgttgattcatggcgccgagctgcc
ttctttgaggagaccggtgagacttatagaagagttatagctgcttgcctacggcctctg
gaacacttcaccctgaaactagctgaaggtctagagtgttcttcagctgataagtcgatg
caactatctgaccagttaacttcaccaacggaacggcttgctgttctaaaactcaatgtc
tcattttttgatgctcagctgtgtgcatggtgtgctcgggttgttgcttcattaacttca
aggtcgcgcaaggaggacaaatttggtgttgctcaactctcagggagtaatgctgctgta
atctcgacactgctatctagtttgttagctgtggaagctctcatgggaaagaaaaccaat
gtacagtccgcgcatttgatgggtcctgctggaatcaaatgggccactgtcaacactggc
agaagggagtcaacagcaggtgcaatggggaaaataagagggagccctctgtatgcgaaa
gcttattcaatggctgatatcctgaaaacttcaatttactgcattgcatctgcttttcag
aatgagatgctgggcagtgggaaagcagggctccttgagaaggaatggatcattagcagt
aaaccgctttatggaactcaagagctcctcctacacaaattgagacttttcttggaccac
caggcaaactag
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