Salvia hispanica (chia): 125189767
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Entry
125189767 CDS
T09851
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125189767
03036 Chromosome and associated proteins [BR:
shis03036
]
125189767
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
125189767
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
125189767
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
Spt6_S1
HHH_3
Tex_central_region
SPT6_acidic
HHH_9
Tex_N
DUF6625
Motif
Other DBs
NCBI-GeneID:
125189767
NCBI-ProteinID:
XP_047942962
LinkDB
All DBs
Position
5:28722422..28731846
Genome browser
AA seq
1345 aa
AA seq
DB search
MDQHRDQFMLDEDDYELLQESNISVNRSKLESKKFKRLKKARGDAEEGPSWFTDEEEFDR
SGKGGRTAEEKLKRSLFGDDDGQPLEDIAEEDEQLEEEDDADIGEEDEMADFIVDEEEVD
EHGTPVRRKKPKKNRQHPGISSSALQEAHEIFGDVEDLLRLRKIDVRDMFGETSERSLED
QFDPSVLSEKYMTKKDDQIREIDIPERMQISKESTGHPPTDEFSVKMETEWIYDQLVSGM
VPLFNRSGTTNEEVDDELKRHIARFLELIHIQNLDVPFIAMYRKEEILSLLKDPTDHESS
IENDMNQKPTLKWHKVLWAIQDLDQKWLLLLKRKNALQSYYTKQFEEERRRVYDETCLRL
NEQLFQSITKSLEAADSEREVDDVRSKFNLHSPPGEVVLDEGQFKRPKRKSHYSICSKAG
LWEVASKFGYSSEQFGLQISLEKMRMDELEDAKETPEEMASNFTCAMFEIPQAVLKGARH
MAAVEISCEPCVRRHVRSIFMDNAVVSTSPIPEGNTAIDSFHQFYGVKWLKDKPLNRFED
AQWLLIQKAEEELLQVTIKLPEVVLDKLISVSYDYYLSDGVSKSAQLWNEQRKLILNDAF
SNFLLPLMEKEARSLLTSRAKSWLLLDYGRLLWEKVSVAPYQRKENDVSSDEETAPRVMA
CCWGPGKPATTFVMLDSSGEVLDVLHAGSLSIHGQSVNEQQRKRNDQQRVQNFMMDHQPH
IVVLGAKNLSCTQLKEDIYEIIFKMVEDNPCDVGHEMDNLNIVFGDESLPHLYENSRISV
DQLPSQEGIIRRAVGLGRHLQNPLAMAATLCGPGKEILSWKLNPLENFLTPDEKYGMVEQ
VMVDVTNQVGLDINLAASHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDLQQSH
GLGKKVFINAVGFLRVRRSGLTSSSSQFIDLLDDTRIHPESYSLLGRREYILAQDLAKDI
YREDRNDDANDDDDVLEMAIEHVREKPHLLRAVDVHEHAEQKNHLNKKETFNDIRLELMR
ELMEGFQDRRRPFVEPSQDEEFDMITGETEEKLLSERRIVQVEKVQGQKAICVLESGIAG
ILSKEDYMDEWWDMNNLYEKLRKGDFLTCRIKSIQKNSYQVFLTCRESEMRSNRYRSHRM
TEPYYHEEHCTLQTVQEKARKEKELAKKHFLPRVIIYPRFQNITSDAAIEFLSDKDPGEC
VICPSSGGPSFLTLTLKVYDGVYANKDIVEGGKEHKDILSLVRIGKTLKIGEDTFEDLDE
VMDRYVDPLVAHLKSMLNYRKFRRGTKTEVDELLRIEKAENPMRIVYCFGIFHEHPGTFI
LTYIRSSNPHHEYIDLYPKGFKFRK
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacacagggatcaattcatgcttgatgaggatgattatgaactcctccaggaa
agcaatatatctgtcaatcgttcaaagctcgaaagtaagaagtttaagagactgaagaag
gctaggggggatgcagaagaagggccttcctggtttaccgatgaagaagaatttgataga
agtgggaagggtgggcgtactgcagaggagaagctcaagcgtagtttgtttggtgatgat
gatgggcaacctcttgaggatattgcagaggaggatgaacagcttgaagaagaagatgat
gcagacattggtgaggaggatgagatggctgatttcattgttgatgaagaagaagttgat
gagcatggaacccctgttaggagaaagaaacctaagaaaaacagacagcacccagggatt
tcctcatctgcactccaggaagcacatgaaatttttggtgatgttgaagatctcctgagg
cttcgcaagatagatgtgcgagacatgtttggtgaaactagtgaaaggagtcttgaagat
cagtttgatcctagtgtgctttctgaaaagtacatgacaaaaaaggatgatcaaatacgg
gaaatcgatattcctgaaagaatgcagatatctaaggaaagtacaggccaccccccaaca
gatgagttcagtgtcaaaatggagactgagtggatttacgatcaacttgtcagtggtatg
gtacctttgttcaacaggagtggtactacaaatgaagaagtggatgatgagctgaagcgg
catatagctagattcttggagttgattcacattcagaatttagacgtcccgttcattgct
atgtacaggaaagaggaaatattaagccttctaaaggatccaactgatcacgaatctagc
attgaaaatgatatgaatcaaaagcctacgctgaagtggcacaaggtactttgggcaatt
caggacttggatcagaagtggcttcttcttttgaaaagaaaaaatgctctacagtcatac
tatactaagcaatttgaagaagagagacggagagtgtatgatgagacatgcctaagatta
aatgaacagctgtttcagtcaatcactaagtcactcgaagctgctgattcggaaagagaa
gtggatgatgtacgctcaaaatttaatttgcattcccctccgggcgaagttgtcctagac
gaaggccagtttaaaagaccaaagagaaaatcacattacagcatttgtagtaaagctgga
ctgtgggaggttgcaagcaaatttggttacagttctgagcaatttggtttgcagatatct
ctggagaaaatgagaatggatgaattggaggatgctaaggaaacaccagaggaaatggct
tctaatttcacctgtgcaatgtttgagatacctcaagcggtattgaaaggcgcaaggcac
atggcggcggttgaaattagctgtgaaccatgtgttaggagacatgtgcgcagtatcttt
atggacaacgctgtagtgtcaactagtcctattcctgagggaaacacagctattgattct
tttcaccagttttatggagtaaagtggttgaaggacaaaccacttaatagatttgaggat
gctcagtggcttttgattcagaaagctgaagaggagctcttgcaagttactataaagctg
cctgaagtagtccttgataagttgataagtgtctcatatgattattatttgagtgatggt
gtaagtaaatctgctcagttatggaatgagcagaggaaactgattcttaatgatgcattt
agcaattttcttcttcctttaatggaaaaagaagcaagatcactgctgacaagtagagca
aaatcatggctactactagattatgggaggctattgtgggaaaaagtatctgttgcacca
taccaacggaaagagaatgatgtcagttctgatgaagaaactgcacccagggttatggct
tgctgttggggccctggaaagccagcaactacctttgtgatgttggattcatctggagaa
gttttggatgtattgcatgctggttccctcagcattcatggtcaaagtgtcaatgaacag
caacgtaaaagaaatgatcagcagagagtgcaaaattttatgatggaccatcaaccacat
attgtagttttaggagcaaagaatttgtcttgtacgcagttgaaggaggacatttatgag
ataatattcaagatggtggaagataatccttgtgatgttggtcatgagatggataatctg
aatattgtctttggcgatgaatctttaccgcacctgtatgaaaattctcgtatctcagtt
gatcagcttccttcacaagaaggtatcattagacgtgctgtgggtcttggacgtcatctt
cagaatccattagcaatggctgccacattatgtgggccgggtaaagagatattatcttgg
aagcttaaccctttggagaactttcttactcctgatgagaagtatggaatggttgaacaa
gtgatggtagatgtaacaaaccaggtgggccttgatattaatttggctgccagtcatgaa
tggttatttgctcctctacaatttatttctggtctaggacccagaaaagcagcttctctc
cagaggtccctagtaagagcaggtgccatcttcactaggaaagacctgcagcaatctcat
gggcttggcaaaaaggtttttatcaatgctgttgggttcctccgagtgcgacgtagcgga
ttgacttccagtagtagtcaatttattgatctgttagatgacaccagaattcatccagaa
tcatactccctcttgggacggagggagtatattcttgcacaagatctggccaaggatatt
tatcgggaggataggaatgatgatgccaatgacgacgacgatgtcctggaaatggcgatc
gagcatgtcagggagaagccacatttactaagagctgtagatgttcatgaacatgctgag
cagaaaaatcatctgaacaagaaagaaaccttcaatgatattagattggaattaatgcgt
gaattgatggaaggttttcaggatcgtcgcagaccctttgtagaaccaagtcaggatgaa
gagtttgacatgatcactggagagaccgaagagaaactactctccgaacgaagaattgtg
caggttgaaaaggttcagggccagaaagcaatttgcgtccttgaatctggaatagctggc
attctcagtaaggaggattacatggatgagtggtgggatatgaataatttatatgagaag
ctgcgtaagggtgattttttgacttgcaggattaaatcaattcagaaaaatagctatcag
gtgtttttaacttgtagagaaagtgaaatgaggagtaatcgttacaggagtcacagaatg
acagagccttactatcatgaagaacactgtactctgcaaactgttcaggaaaaagctcgc
aaagagaaggaacttgcaaagaagcatttcctgccgagagtgatcatttacccacgcttc
caaaatataacgtctgatgctgcgatagagtttttgtccgacaaggatcccggtgaatgt
gtcatatgccctagttctggtgggccatcatttttgacactgactctgaaagtttatgat
ggggtatatgctaacaaggacattgtagaaggtggaaaagagcacaaggatatattgagc
ttggttcggatcgggaaaacactgaaaatcggagaggatacatttgaagatcttgatgag
gtaatggatcgttatgtagatccactggtagctcatttgaagtcgatgcttaattaccga
aagttcaggcggggtactaaaactgaagttgatgagctcctcagaattgaaaaggctgag
aatcctatgagaattgtatattgctttggaatatttcacgagcatcctggcacattcatc
ttgacgtatatacggagttctaatcctcaccacgagtacatagatctctatccaaaggga
tttaagttccggaaatga
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