Salvia hispanica (chia): 125190258
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Entry
125190258 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125190258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125190258
03009 Ribosome biogenesis [BR:
shis03009
]
125190258
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125190258
Spliceosome [BR:
shis03041
]
Complex A
U1 snRNP components
U1 related factors
125190258
Complex B
125190258
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Helicases
125190258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125190258
NCBI-ProteinID:
XP_047943469
LinkDB
All DBs
Position
5:complement(25196362..25204409)
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AA seq
564 aa
AA seq
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MSYVPPHLRNSSANPVSAAKTLVNGNSDHFHSKQLNGSYSQFASAKSNNNNGNSINLWNA
GSRSSGNYAASVPEPVAPQWQPSDRVMQLNAEQVEEVCMRLNVDATVPPDSQPASAPIES
FTDMNLHASIMKDIAFHGYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQH
CLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFKTAIVVGGTNISEQRSEL
RAGVSIVVATPGRFIDHLQQGNTSLLRISFVILDEADRMLDMGFEPQIREVMQNIPKKHQ
TLLFSATMPVEIEELAQEYLTDPVRIKVGKVSSPTANVSQVLEKVPENEKIDRLLDMLVE
AAAQSQKCSHSFPLTIVFVERKSRCDEVADALIQQGLQAASLHGGRSQSEREAALHDFRH
GPTRILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRD
MFLVAQIKKAIQDVESGNSLTFATGKTARRKEREAIAASKDSKLTLSKLSLVGSTAINVE
DKYRHMMVPAVGRKEGSADDAWDD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttcctcctcacctgagaaactcttccgccaaccccgtctcagccgccaaa
accctagtaaacggcaactccgatcattttcactccaagcagctcaacggctcttactct
caatttgcttccgctaaaagcaacaataacaatggcaactcaattaatttgtggaatgcc
ggttctcggagctccggaaattacgccgcatcggtgccagagccggtcgctccgcaatgg
cagccgtccgaccgtgttatgcagctgaatgcggaacaggtcgaggaggtttgcatgagg
cttaacgttgatgctacagttccaccagattcgcaacctgcatcagctcctattgagtcc
tttactgacatgaatttgcatgctagcatcatgaaagacatagcatttcatggatatacc
accccaacttcaattcaagctcaggctatgccagttgctctaagtggaagggatcttttg
ggttgtgcagaaactggtagtgggaaaacagctgcattcaccatacctatgatacagcat
tgcctggcccagcctcctattcggcgtggagatggacctttggcattagtattagcccca
accagagagctggctcaacaaatagagaaagaagtgaaagccttcagccgatctttggac
tcattcaaaactgcaattgttgtgggtggaacaaacatttctgagcagaggtctgagctg
cgggctggggttagtatagtagttgctactcctggaagatttattgaccatcttcaacag
ggaaatacttctttattgaggatatcgtttgtcattcttgacgaagctgatagaatgctt
gacatgggatttgagcctcagataagagaggtgatgcaaaatattcccaagaagcatcaa
actttgctcttcagtgctacaatgccagttgagattgaagagttagcacaggaatactta
acagatccagtacggataaaagttggaaaagtcagcagcccaacagcaaatgtatcccaa
gttttggagaaggtaccagaaaatgagaagattgacaggctgctagatatgcttgttgag
gcagctgcccaatctcaaaagtgtagccactcattccccttgaccatcgtttttgtggaa
cggaagagcagatgtgatgaagtcgctgacgcattgattcaacaaggcctgcaagcagct
tctcttcatggtggtcgtagtcaaagtgagagggaggctgctctccacgattttagacat
ggtcctactaggatactggttgctacagatgttgcatcacggggattggacgttactggg
gttgctcatgtcatcaatttggatcttccaaagaccatggaagattatgtacaccggatt
ggaagaaccggtcgtgcaggatcaacgggccaagctacatcgttttatactgatcgtgac
atgtttcttgtagctcaaataaagaaagcaatccaagatgtcgagtctggtaattcctta
actttcgcgactggaaagactgcaagaagaaaggagagagaagctatagctgcttcaaaa
gattcaaagcttacactatcaaagctgtcattggtgggttcaacggcaataaatgtggag
gacaaatacaggcatatgatggtccctgcagtaggcaggaaagagggctctgcggacgac
gcctgggatgactga
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