Salvia hispanica (chia): 125190311
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Entry
125190311 CDS
T09851
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125190311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125190311
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125190311
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125190311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
125190311
NCBI-ProteinID:
XP_047943540
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All DBs
Position
5:24304651..24310754
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AA seq
662 aa
AA seq
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MSGLLNSSLNGSTSSLPDSTGRSYTSSFSVQSGAGSPVYHHAGNIQGLHNLHGNFNVPNM
PGALGSRSTTMNNIASSGLQQASGNLSTGRFSSNNLPVALSQISHSNTHVHSGMASRGGM
SVIGNQGYSSSTNGVGGSIPGILPTSAAISNRTSVSGLGISPVLGNAGQRMASSMGSIVG
GGNIGRNISSGGGLSMPGLTSRLNLSANSGSGNLNVQGQNRLMSGVLQQASPQVLSMFGN
SYPSAGGPLSQNHVQSVNNLTGMSMFGDMNSNDGAPFDINDFPQLNSRPSSSGGQGQIGS
LRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNIDYSMDMHQKEQIHDTSVSMMQPQNFS
MGRSSGFNLGATYSPHRPQQQQQHTQSASGSGGPFSNVNNQDLLHVHSSELFPPSHSNYH
SQSSGPPGIGLRPLNSPSSVSGMGSYEHLQQYQQHPNQSQFRLQPMSAVGHPFRDQGAKP
MQAAQTASDPFGLRGLLSVIRMSDPDLSSLALGIDLTTLGLNLNSTENLHKTFGSPWSDE
PAKGDTEYAVPQCYYAKQPPPLSQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRAW
FYHREIHYWFTRVSNMEPLVKTSAYERGSYICFDPNTWETIRKDNFVLHYDMLEKRPALP
QH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttgctcaattcatcactgaacggttctacttcaagtcttcctgacagcaca
gggcgttcatacacatcatcattttctgtacagtccggtgctggttctcctgtttatcat
catgctggaaatatccagggactgcataatcttcatggaaacttcaatgttccaaacatg
ccgggtgcgcttggatcaagaagtacaactatgaataacattgcttcaagtgggttgcaa
caagcttctggcaacctttctactggccgtttttcttccaacaaccttccagttgccctt
tctcagatatctcacagcaatacgcatgttcattcagggatggcaagtaggggtggtatg
agtgtcataggaaaccaaggatatagtagcagcactaatggagttggtggttctatccca
gggatcctaccaacatctgctgcaattagcaatcggacatctgtttccggtcttggtata
tctccggtcctaggaaatgcagggcaacgaatggcaagttcaatgggtagtatagttggt
gggggcaatattggccggaatattagctcaggtggagggctatctatgcctgggcttact
tctcgattgaatttatcagccaacagcggttccggaaatctaaacgtgcaaggacaaaat
aggctgatgagtggtgtacttcaacaagcttctccacaggtactgtcaatgtttggcaat
tcctatccttctgctggtggtcctctatctcaaaaccatgttcagtccgtaaataatctt
acgggtatgagcatgtttggtgacatgaattccaatgatggtgctccttttgatattaat
gatttccctcagctgaatagtcgtcccagttcatctggaggccaagggcaaataggttct
ttacgaaagcaaggccttagtcctattgttcaacaaaatcaggagttcagtatccaaaat
gaagattttccagccttacctggatttaagggtggcaacatagattactcaatggacatg
catcagaaagaacaaattcatgatacctctgtttccatgatgcagccccaaaatttttct
atgggacgctcttctggtttcaacttgggtgcaacttattcaccccatcggccacaacag
cagcagcaacatactcaatcagcaagtggtagtggtgggcccttttctaatgtaaataat
caagatctgctccatgtacatagttcggagttgtttccaccatcacattcgaactatcat
tcacagagcagtggacccccgggaattggattgcggcctctgaatagtccaagttcagta
tctggtatggggtcgtatgaacacctacaacaatatcagcagcatcccaatcaatcccaa
ttccgccttcaaccaatgtctgctgttggtcatccttttagggatcaaggagcaaagcct
atgcaggctgcccagacagcttcggatccatttggcttgcgtggtttattaagtgtgata
agaatgagtgatcctgatttgtcatctcttgcacttggaattgacctaactacacttgga
ttgaacttgaattctacggaaaatcttcataaaacgtttggttccccatggtcagacgag
cctgcaaagggtgatactgaatatgctgtgccacaatgttattatgccaaacaaccacca
cctttaagtcaagcatacttctcaaagttccaattagacacgctgttctacattttttat
agtatgccaaaggatgaagctcaattgtatgcggcaaatgagttatataatagagcctgg
ttctatcatcgggagatacactattggtttacaagagttagcaacatggagcctcttgtg
aagacaagtgcttacgagagaggttcttatatctgttttgatccaaacacatgggagaca
attcgaaaggataattttgttcttcattatgacatgttggaaaagagaccagctctgcct
caacattga
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