Salvia hispanica (chia): 125190343
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Entry
125190343 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125190343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125190343
03012 Translation factors [BR:
shis03012
]
125190343
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125190343
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125190343
Translation factors [BR:
shis03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125190343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
R3H
Helicase_C
HA2_C
OB_NTP_bind
Ank_2
Ank_5
AAA_22
HA2_N
ATPase
AAA_19
nSTAND3
Rad17
Ank
Ank_3
Ank_4
ABC_tran
AAA_7
AAA_16
Sigma54_activat
NACHT
AAA_23
Motif
Other DBs
NCBI-GeneID:
125190343
NCBI-ProteinID:
XP_047943580
LinkDB
All DBs
Position
5:complement(291168..297740)
Genome browser
AA seq
1208 aa
AA seq
DB search
MGPPGSSGMEAGNKRQKGRVPANNMKIAEASRIRIAEILENFRSSDDEVYKFEENLNNQE
RAAVHVMCRKAGLKSKSHGKGQDRRLHIYKCKREVSSMNGRENIASFRFSGESQAALREL
FSSYPPNAVDMSGNKLDISRGKSDSGVSRDDFFCRPTTNPSEIASKIQTLASRIEKETSL
KQIAQNRSKLPIASFRDAITSSVESNQVVLVCGETGCGKTTQVPQFLLDHAWSKGETCKV
VCTQPRRISATSVAERIASERGESIGDSVGYKIRLETKGGRQSSLVFCTNGVLLRVLVNK
DNRSTKRKKASKKGQSSLADITHIIVDEIHERDRFSDFMLAIIRDMLPSHPHLRLVLMSA
TIDADRFSKYFGGCPVIRVPGFTYPVKSYYLEDVLALVRSSENNHVKCTNEDVAVKDSPL
TEECRVALDEAIELASSNDDFDPLLELISSQGDSRIFNYQHSKTGVTPLMVSAEQGRVSY
VCTLLSFGVDCDLRCNAGKTALDYAEQGNQGEVTEIIKKHMGKAFTQSDKEQDLLDKYLS
HVDPELIDCLLIEQLLRRICNDSTDGAVLVFLPGWDDINRTREKLLSSPYFKDPSKFLVI
ALHSMVPLVEQKKVFKHPPPGCRKIVLSTNIAETSVTIDDVVYVIDSGRMKEKSYDPYNN
VSTLHSSWISKASAKQREGRAGRCQAGICYHLYSKFRASSLPEFQVPEIKRMPIEELCLQ
VKLMDPSCKIEEFLQKTLDPPVYETIQNAITVLQDIGALSLEEQLTELGQKLGALPVHPL
TSKMLFFAILLNCLDPALTLACASDCKDPFILPMLPNERKKAQVARLELASVYGGNGDQL
AIIAAFDCWKMAKQRGDEAKFCSQYFVSAATMKLISSMRKKLEGELLRHGFIPEDASRCS
LNARDPGILHAVVFSGLYPMVGRIIPQSNRSVVETASGNKVRLHQFSTNGKLSSKRFSIP
PLVMFDEITRGDGGIHIRNCCVVGSLPLMLLATDIVVAPTEEDDDEGDESDADEPDANID
SDEDDKAEPHSSSKSNSEKILSAPENVVKVVVDRWLPFQLTALDVAQIYCLRERLSSAIL
FKVTKPREVLPEHLGASLYAIACILSYDGMSGISLPPEPVDTLTTMVSVADISHGRRVPI
NRPAKSYLKSLLYPDHSYPNQSHTSHHHKSHLQKQVSKNATNGSAPQGTSTGKGNYSKRQ
RGNGNGFR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgggcccaccaggttcatccgggatggaggcggggaataagcggcagaaagggagagtg
ccggcaaataatatgaagattgccgaggcctcccgcattcgcatcgctgagattctggag
aacttccggagttctgatgatgaagtatacaaatttgaagagaacctgaataatcaggag
cgggcggcagtgcacgttatgtgcaggaaggcggggttgaagtcaaagagtcacgggaaa
ggccaggatcgccgccttcatatctataagtgtaaaagggaagtcagcagtatgaatggg
agagagaacattgcttctttcagattttcaggggaatcacaggccgctttacgggaattg
ttttcttcctatccccctaatgctgtggatatgagtggaaataaacttgacatcagtagg
ggaaaaagtgatagcggagtctcaagagatgattttttctgcagacctacgacgaatcca
tctgaaattgcaagcaagatacaaacacttgcttcccgaattgagaaagagacgagcttg
aaacagatcgcacagaacaggtccaagcttcctattgcatcttttagggatgctatcaca
tcttcagtagaatctaaccaggttgtgcttgtatgtggtgaaactggatgtgggaaaaca
acacaggtcccccagtttctcctggaccatgcatggagtaaaggagagacgtgtaaagtt
gtttgtactcagcccaggcgaatctctgccacatcagtcgctgaaagaattgcttctgaa
agaggtgaaagtattggagactctgttggatacaagattcgactggaaaccaaaggtgga
aggcagtcctctcttgtgttctgcaccaatggggttctgctgagggttctagtcaataaa
gataacaggagtacaaagagaaaaaaggcgtcgaaaaaaggacagagttctctggctgat
ataacccacataatagtggatgaaattcatgaaagggatcgcttctccgatttcatgctc
gcaataatcagagacatgcttccttcgcatcctcacctgcgcctggtattgatgagcgcc
accattgatgcggaccggttttcaaagtactttggaggctgcccagttattcgtgtaccg
ggttttacatatcccgtaaaaagttattacttggaggatgtactagcacttgtgagatca
tctgaaaataatcacgttaagtgcacaaatgaggacgtggcagtgaaggactctccctta
accgaggaatgccgagttgctcttgacgaggctattgaattagcttcatcaaacgatgac
tttgatccccttctcgagcttatatcttctcagggagattcgagaattttcaattaccag
cactcaaaaaccggagtaacccccttgatggtgtcagccgagcaaggaagagttagctat
gtttgcacacttctctcatttggcgtagactgcgacttgcggtgtaatgcagggaagaca
gctctcgattatgcagaacaaggcaatcagggggaagttactgaaatcattaaaaaacac
atgggaaaagcatttacgcagtcagataaggaacaagatttactcgataaatacttatcg
catgttgaccctgaacttatagattgtctgcttatcgaacaacttcttaggcgaatctgt
aatgactctactgatggagctgttctcgtgtttcttccgggttgggatgatataaacaga
acgcgagagaagttgctatcaagtccttatttcaaggatccatcaaaatttctcgttatt
gctcttcactctatggttccattggtcgagcaaaagaaagttttcaaacatccgcctcct
ggatgccgcaaaattgttctttctactaatattgccgaaacatcagtcactatcgatgat
gttgtttatgtcatagacagcgggcggatgaaagagaaaagttatgacccgtataacaat
gtgtcaactcttcattcttcttggatatcaaaggcaagtgctaagcagcgagaaggtcgt
gcagggcggtgtcaagcaggtatttgttatcatctatattcaaaattccgagcttcttct
cttccggagttccaagttcccgagataaagaggatgccgatagaagagctgtgccttcag
gtgaagcttatggatccatcttgcaaaatcgaagaatttttgcagaagacgctggatccg
cctgtttatgagacgatacagaatgcaataacggttcttcaggatatcggcgcgttgtct
ctagaagagcaactcacggaacttgggcagaaactcggagctctacccgtccaccctctg
accagcaaaatgttattttttgcgatattgttgaattgccttgacccggcattgacttta
gcttgcgcttccgactgcaaagaccccttcattttgccaatgcttcctaatgaaaggaaa
aaagctcaagtggctagactagaactggcttcagtctatggtggcaacggtgaccagtta
gctataattgctgccttcgattgctggaaaatggcaaaacaaaggggcgacgaagcgaag
ttttgttctcagtatttcgtatctgcagcgaccatgaagttgatttcgagcatgcggaag
aaactcgaaggcgaactacttcggcatggttttattccggaagatgcctcccgctgtagc
ctcaacgcacgtgaccctggtatactccatgctgtagttttctcaggtctatatccgatg
gttgggagaattattccgcaaagtaatagatctgttgtcgaaactgccagcgggaataag
gtgaggttgcaccagttttcgaccaacggcaagctctcctcgaagagattcagtatccct
cctttggtcatgtttgatgagataacccgtggagacggcggaatacatattaggaactgt
tgtgtcgtaggttcgctccccttaatgttgttagccactgatatcgtcgtggccccgact
gaggaagatgatgatgagggtgatgaaagcgatgctgatgaacctgatgccaacattgac
agtgacgaggatgataaagcagagcctcatagttcatcgaaatccaacagcgaaaagatc
ttgtcggcgccagagaatgtggttaaagtcgtagtggatcgatggctgccgtttcagttg
acggctcttgatgttgctcagatatactgcttgagggagagactatcttcagcaatcttg
ttcaaggtaacgaaaccgagggaggttctcccggaacatcttggtgcctcactgtatgca
atagcctgcatcctctcttacgacggtatgtccgggatctcgctgccaccagaacccgtc
gacaccctcaccacgatggtcagtgtcgccgacatcagccatggtaggagggtgccgatc
aatcgcccagctaagagctatctcaagtcgcttctttaccctgaccactcctatccaaac
cagagccacacgtcgcaccatcacaaaagccatcttcagaagcaagtgtcaaaaaacgct
acgaacgggtcggccccacaaggtacgagtaccgggaaggggaactactccaagcggcag
cgtggcaatggtaatggatttaggtga
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