Salvia hispanica (chia): 125190403
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Entry
125190403 CDS
T09851
Name
(RefSeq) aladin
KO
K14320
aladin
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125190403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125190403
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125190403
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANAPC4_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Prp19
WDR55
WD40_MABP1-WDR62_1st
PD40
Lactonase
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
125190403
NCBI-ProteinID:
XP_047943669
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Position
5:complement(6516306..6520794)
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AA seq
437 aa
AA seq
DB search
MPSFPQPGTVTICEINRELVTADHLGDDQANDTYSKILGNIFSPIQFESESLLGVGTEQE
TVERRKGNSVLEALFSGSLRPLLQPADVNLLNGIDLHSVSWHNHKQILAFVSSHHQVMIC
DYNDSDGKVPCVLSHESQKDVKILEWRPNGGKTLSVACKGGICIWAASSPGNVPSVRSGV
TSNPLSRGSVTRWTLVDFLQSSDSEQITALSWSPDGRYLASASYESSSFTIWDVSLGLGT
PIRRGLGGISLLKWSPSGDYFFSAKFDGTFYLWETNTWTSEPWSSKNGFVTGATWDPDGC
MVLLSFSESASLGSIHFTSKPPSLDAHLIPVELPEIKLLTDSQVIEKIAWDASGERLAVS
YKDGDEQYIGLVAVFDVKRTPLISTSLVGFIRGPGDNPKPVAFSFYDKFKQGPLFSVCWS
SGFCCTYPLIFRSNNLP
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgccttcttttcctcagccaggcacggtcaccatttgcgaaatcaacagggaactagtt
acggcagaccacctgggagatgatcaagccaatgatacctactctaaaatactcgggaat
atattcagtccgatccaattcgaatcagagagtttgttgggggtggggactgagcaggaa
acggttgaacggaggaagggtaattcggtactagaggctctgttcagtggctccctcagg
cctcttttgcagcctgccgatgtaaacctcttaaatggcattgatcttcacagtgtaagt
tggcacaaccacaaacagattttagcatttgtttcttcacatcatcaggtgatgatctgt
gactacaatgattctgatggaaaggttccttgcgtcttgtcccatgaatcccaaaaggat
gtaaaaattcttgagtggagaccaaatggagggaaaaccctttctgttgcatgcaagggt
ggaatttgcatttgggctgcttcttctcccggtaatgttccatctgtaagatctggggtg
acttcgaacccactttcaaggggctctgtgacacgatggactctggtagatttccttcag
agttctgattctgaacagattactgcactttcatggagtcctgatggaagatatttagct
tcagcttcatatgagagttcatcgttcaccatttgggatgtttcactaggtctgggcact
cctattcgaaggggcctaggaggcatatcattgttaaagtggtctccatcaggagattat
ttcttttctgcaaaatttgatggaacattttatctctgggagacaaacacatggacatcg
gaaccatggtcctcaaagaatgggtttgtcacgggagcaacatgggatccagatggctgt
atggtacttctttctttctcagaatccgcatcattaggttccattcactttacatccaaa
cctccgtccctagatgcacatcttataccagttgaattgccagagataaaattattgacc
gacagccaggtcattgagaagatagcatgggatgcttcaggagagagattggcggtgtca
tataaagatggtgatgagcaatacatcgggcttgttgcggtatttgatgttaaaagaact
cccttaatttcaacatcgttggttgggttcatccgaggtcctggggacaatccaaagcca
gtggcattttcattctacgacaaatttaaacaaggaccattgttttctgtgtgctggagc
agtggattttgctgcacctaccctcttatattccgttcaaataatctaccatag
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