Salvia hispanica (chia): 125190542
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Entry
125190542 CDS
T09851
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
shis
Salvia hispanica (chia)
Pathway
shis03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125190542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125190542
03036 Chromosome and associated proteins [BR:
shis03036
]
125190542
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125190542
Coactivators
SAGA/TFTC/STAGA complex
125190542
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125190542
STAGA complex
125190542
TFTC complex
125190542
SAGA complex
125190542
SLIK complex
125190542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Cytochrom_D1
Beta-prop_DCAF12
Beta-prop_NWD2_C
PROPPIN
PALB2_WD40
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
125190542
NCBI-ProteinID:
XP_047943827
LinkDB
All DBs
Position
5:7636418..7643872
Genome browser
AA seq
666 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLVLQQEKQQSSSKGSNASSTAQIDPDIAKQILSFSEV
DGPAQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQDARSFFNSFR
GDHEVMHIRDLQKLEGVLSPSHLKEMEFAHSLRQKKVGIKICQYSYDLLLQYLHKSQSIT
MLGIVNEHINFQVSPGQPNSIADDAEYVTFFGGDQDTANLLNQKEIHWGLLEDSLEERLE
KIGAPSMDSEMADSEAREGELEENKKRSDVKQGTTTKKLKKDKVASATAKAHRSDSVTAP
CVKPELAQPVIPLEVEHSILEDLRNRVQLSSMALPSISLYTFINTHDSLNCASISHDGSM
VAGGFSDSSLKVWDMAKLGQQNVTSPSQGENDLAANEPSSTAGGRNYTLFRGHAGPVHSA
TFSPFGDFILSSSSDSTIRLWSSKLNANLVCYKGHNYPVWDVQFSPLGHYFASASHDRTA
RIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYLATGSSDKTVRLWDVQSGECVRIFIGHR
SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCLAPFVGHGSCIWSLAFSCEGSLLASG
SADCTVKIWDVATSSRVPKSDENGKMGNTSRPRSLKTLLTKSTPVYALQFSRRNLLFAAG
SLSKQL
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaagagatcgataaagtggttctcgcctacttggacaagaggggtttcaag
caagccggtctcgttcttcagcaagagaagcagcaaagcagcagcaaaggcagcaatgca
tcctccactgcacagattgatcctgatattgctaaacaaatcctctctttctctgaagtg
gatggtcccgctcagtaccaagaaggttatagcaagctacggtcatgggcttatagttcg
ctggatcagtaccagcatgagttggttagagttttgtatccagtatttatccatgcattt
atggatcttgtggcgaaaggtcatattcaagatgctcgatctttttttaatagctttcga
ggagatcatgaagttatgcacatacgcgaccttcaaaagctagaaggtgttctttctccc
tcacatctgaaggaaatggaatttgcacattctctaagacagaaaaaagtgggcatcaag
atatgccaatactcctatgacctacttctacaatacttgcataaatctcaatcaattaca
atgcttggaattgtcaatgaacacatcaacttccaagtttctcctggacaaccaaactcc
attgctgatgatgctgaatatgtcacatttttcggaggtgaccaggatactgctaatttg
ttaaaccagaaagaaattcactgggggttgcttgaagattctctggaagaaaggttggaa
aagattggtgctcctagtatggattccgaaatggcagatagtgaagcgagagaaggtgaa
ctggaagaaaataagaaaagatctgatgtcaagcaaggcactacaacaaaaaagttgaaa
aaggataaggttgctagtgctacagcaaaagctcatcgttcagatagtgttactgcacca
tgtgtaaaacctgagctagcacagccagtaataccactagaggtggaacattctattctt
gaagatttgaggaaccgtgtgcagttgagtagcatggcgttgccttccattagcttatac
acttttatcaacactcatgacagcttgaattgtgcttcaatatctcatgatgggtcaatg
gtagccggtggattttcagactcatcgttgaaggtttgggacatggcaaagcttgggcaa
cagaatgtaacctctccctcgcagggtgaaaatgatttggctgccaatgagcctagctca
actgctgggggaagaaattacacattattccgaggtcatgcgggaccagtgcattctgcc
acttttagtccgtttggggatttcattctgtcttcttcatcagattctacaattcgacta
tggagctcaaaactgaatgcaaatcttgtctgctacaagggtcataattaccctgtatgg
gatgtacagtttagtccacttggccactattttgctagtgcttcacatgatcgcacagca
aggatctggtcgatggacagaatacagcctctaaggattatggcaggtcatttatctgat
gtagattgtgtgcaatggcatgcaaattgcaactatctcgctaccggatctagtgacaaa
acagtgcgcctatgggatgtccagagtggcgagtgtgttagaatattcataggtcacaga
agtatgatcttaagtttggcaatgtcacctgatggtcgctatatggcatctggcgatgaa
gatggtacaataatgatgtgggatcttgcatccggacgctgccttgccccattcgtcggc
catggctcttgcatttggtcactggctttcagctgtgaaggttcgcttctagcttccggt
tctgctgactgcactgtgaagatatgggatgtagctacaagctcaagagtgccaaaatca
gatgagaacggcaaaatggggaacacaagcagaccgagatcgctgaaaaccttgctcacc
aaatctactcctgtctacgctctgcagttctccagaagaaaccttttatttgctgccggc
tctctctcaaagcagttgtag
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