Salvia hispanica (chia): 125191019
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Entry
125191019 CDS
T09851
Name
(RefSeq) endoribonuclease Dicer homolog 3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125191019
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125191019
microRNA pathway
RISC loading complex
125191019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
DND1_DSRM
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
125191019
NCBI-ProteinID:
XP_047944432
LinkDB
All DBs
Position
5:complement(40498780..40507316)
Genome browser
AA seq
1639 aa
AA seq
DB search
MEMEVERVGNSLKRKVEALDSAPPEAEPMDTDSVSISREYQLKVYEVAMKRNTIAMLDYG
AGKSMISTMMIKEIGRTLKSKDSQRKLIAFLVPTVHLVHQQFKEIQSQTDLLVGQYYGAL
GVDVWNAETWEREINNLDVLVMTPQILLDALRKACICFEVFGFIVLDECHRASGNHPYAK
IMKEFYHKAPVKPKIFGMTASPVVGKDSNQQMGELESLLDSQVFTLDGRVEVELEQYVSS
AKSVCRFYDPSPIDLDIKGKLESAMSKFNAVLLELEKSLPRQHTEIDNGWKMLKDRMSSN
NSNIIFCFENLGLLCTYEAVKVCMESSPMVKEECEVFKESFVQYEKFLSEVLSIIEGALE
HKDPQNVKGGLGSLATGQISPKLLELLEIFRSFGKDTELVCIIFVERIIAAQVIERLMKK
TNDFSHLNISYSTGSSSSVGVGSLSSKGQLDIIESFRDAKVTLLFSTDLEEGIDVSKCSC
VIRFDLPKTVRSHIQSRGQARHKDYHYITMLERGNTKQLDDMLSIARSESSGIDTAIKRE
STDSPLKACNTKEVASYVVESTGASVNADSSISLVHRYCQTLPLHNSVSPKPTFEFSTEG
NLHRCKLTLPPDASFQTLTGPAAGTPNASKKLACLDACKKLHLMGGLNDRLLPLKRGSFP
KKDSTLISVLPSKKVPLPEKDSTLKSETKPTKAKGVTPGAGTTKRKELHGSVRTRLLSGT
WGDKLGDVTFHAYKMDFACNIAEQKYSSFVLLLESELADDVGNMEVDLYLLSKFVKASVS
SCGQMPLNAQQVAKAKCFQQLIFNGLYGKLFVKSSESRKFIFETDELSWDPSHMYLLLPL
ESKDIDTVRPVIDWTGIHSAVSTIEFMKKNALLNLQQRETVDEDTSLHMCEEGTEMNSDT
IHLADRSATIEELKEMVVVAIHTGRIYSIVDIVEGTSGFTPFEGGCDASYSSFADYYHKK
YGIVLKHPQQSLLLLKQSHNSHNLLVDFRKEERDSSEKDGYGAVETKPQQRAHMPPELLV
GTDISTYILKPFYLFPSVMQRLETLMLASQLREEISNRAGCCSIPSSLILEALTTQRCNE
SFSMERLELLGDSLLKYAVSCHLFLKHPEMCEGQLTFNRTRIISNSALHKFGTDRKLQEY
IRDFPFEPRRWTAPGQHSIWPSPCDHQLDTREVPLDDRFFTENAVKLGKTCDRGHRWLAS
KTISDCVEALIGAYYVGGGLAAAVSFMKWLGIEADFDHSLVEDAIRTASLYCHAPKAKDI
DALESKLGYNFSTKGLLLEAITHAAQTEGGVHYSYERLEFLGDAVLDILVTRHLYESHSK
VDPGLLTDMRSASVNNDNFALSAVRRNLHPHLQRVSSLLKDQISEFVSLVSTMSTSALTP
DIKGPKVLGDLVESIAGAVLIDSKLDLDEVWRVFKPILSPLVTPEKLELAPSRELTELCD
SLGYFIKEHYLTESDLVHARLKLQLETVLLNGHGSGPTSKAAKGMAALQLLQKLESRGIR
SSKRPKHDSDSEPPLLPKQERDVDSSGTECSSQKADVPVIPQIETKKGGPRNSLYALCKK
LQWPMPSFETTETKSRTALTFGDMTSFCSFESRISLTIPDSGKLELSGEARGDKKSSYDT
AAIAMLRELERRERIRIGE
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaagtggagagagtgggaaactccttgaagagaaaagttgaggccttggat
tctgcaccacctgaggctgagcctatggatacagactctgtgtccatctccagagaatat
caactgaaggtgtatgaggttgcaatgaagaggaacactatagcaatgttggactatggg
gctgggaaatctatgatatccactatgatgatcaaggaaattgggagaactttgaagagc
aaagatagtcagagaaagctcattgctttcttggttcccactgttcatcttgttcatcag
caatttaaggaaatacagtcacaaacggatcttctcgtggggcaatattacggagctcta
ggagttgatgtctggaatgcggaaacttgggagagggaaatcaacaacctcgatgtgttg
gtcatgactccacaaatcttattggatgctttgaggaaagcgtgcatatgctttgaagta
tttggtttcatcgtactagatgaatgccacagagcaagtggcaaccatccttatgcaaaa
ataatgaaggaattttatcacaaagctccagtaaaaccgaagatttttgggatgactgct
tctcccgtggttggaaaagactcgaatcagcaaatgggggagcttgaaagtttgttagat
tcccaggtttttacattggatggcagggtagaagtagaactcgagcaatacgtttcctca
gccaagtcagtgtgcagattttatgatccgtcacctatcgatttggatatcaaagggaaa
ttagagtctgcaatgtctaagttcaatgctgttttgctcgaactcgaaaagtccctgcca
cgtcagcacacagaaatagacaacggatggaagatgttaaaggatagaatgtccagcaat
aattcaaatatcatattttgcttcgaaaatctggggctgctgtgcacttatgaggctgta
aaagtatgtatggagagttctcccatggttaaagaagaatgcgaggttttcaaggaaagt
ttcgtacaatatgaaaagtttctttcggaggttctttcaataatcgaaggagctttagaa
cataaagatcctcaaaatgtgaagggtggattgggatcactagctacaggccaaatatct
ccgaaactgctagagctactggaaatatttagatcgtttgggaaagatacagagctcgtc
tgtatcatatttgtggaaagaataattgctgctcaagtaattgaacgattgatgaagaaa
acaaacgatttctctcatcttaacatatcatattcgacaggaagtagctccagtgttggt
gttggcagtctttcatccaaaggacagttagatattattgaatcgtttcgtgatgcgaag
gtaactcttctgttttctacggaccttgaggagggaattgatgtatccaaatgttcctgc
gtgattcgcttcgatctaccaaagactgttcgtagtcacattcagtcacgaggacaagct
cgccacaaggattatcattacatcaccatgcttgagagaggaaacaccaagcaattagat
gatatgctttctattgcaagaagtgaatcttcagggatagatacggccattaaacgagaa
tctactgattctccacttaaagcttgcaatacaaaagaagttgcttcatatgttgtcgaa
tcgaccggggcatcagtcaatgcagattccagcatcagcctcgtacatcgatactgtcaa
acactacctctacacaattccgtctccccaaagccgaccttcgaattttcaacggaggga
aatcttcatcgatgcaagctgactctgccacccgatgcatctttccagactttaaccgga
cctgcagcgggcactcccaatgcatcaaagaagcttgcttgcttggatgcgtgtaagaag
ctgcatctgatgggcggtctcaatgatcgtttacttcctttaaagagagggtcgtttcct
aagaaggattccaccttgataagtgtacttccttcaaagaaagtgccgttgcctgagaag
gattccaccttgaagagtgaaacgaagccgacaaaagccaaaggagtaactccaggggca
gggacaacgaagagaaaggagttacatggttcagttcgcacccgtcttttatcaggaact
tggggggataaactcggcgatgtcacttttcacgcatacaaaatggactttgcttgtaat
atcgccgagcaaaaatattcaagtttcgtgcttttgctggagagcgagctagccgatgat
gtggggaacatggaagtggatttgtacttgttgtccaaattcgttaaggcttcggtttct
tcttgcggccaaatgcctctcaatgcacaacaggtggcgaaagctaaatgcttccaacag
ctaatatttaacggtttatatgggaagttgtttgtcaaatcatcggaatctagaaagttc
atattcgaaacggatgagttgtcgtgggatccatcacatatgtatctacttttgcccttg
gaatcgaaggatatagatactgtgcggccggtgatcgattggacgggaattcattccgct
gtttcaacaatcgagtttatgaaaaaaaatgctctgttgaatcttcagcaacgtgaaaca
gttgatgaagatacatcgcttcatatgtgcgaagaagggactgaaatgaatagcgatacc
attcacttggccgacagatctgcaactatagaagagctcaaggagatggtggtggtagcc
atccacaccggcagaatctattcgattgtggatattgtcgagggtacgtctggtttcacc
ccttttgaagggggctgtgatgccagttattcgtccttcgctgattattaccacaaaaaa
tatggtattgttctgaagcatccacaacagtccttgttgcttctgaagcaaagccataat
tcacataatcttcttgtggacttccgaaaagaagagcgcgattcttcggagaaagatggc
tatggggctgtcgagacgaagccacagcaacgtgcacacatgcctccagaactcttagtt
ggcactgatatctcgacgtatatcttgaagccgttctacttgtttccatcggtaatgcag
cggctggagacactaatgctggccagccagcttagggaagaaatctcgaatcgggcaggc
tgttgcagtatacccagctcgttgattctagaagctctcacgacacagagatgtaacgag
agtttctcgatggagcgactagagttgcttggagactcattgctgaagtatgccgtcagc
tgccacctctttctgaagcatccagagatgtgtgaggggcaattgactttcaatcgtact
cggataatctccaactcagctctccataaatttggaacagatcgcaagctccaggaatat
atacgagatttcccatttgagccacgccgttggactgctccaggacagcattcgatatgg
ccatctccgtgcgaccatcagttggatacgagggaagttcctctcgatgacagattcttt
accgaaaacgctgtgaagcttggaaagacttgtgatagaggtcaccgttggcttgcttca
aagaccatatctgactgcgttgaagctctcatcggggcatactatgtcggtggtggtctg
gctgctgccgttagttttatgaagtggctcggtatagaggccgactttgatcattcttta
gtagaggacgctatcagaaccgcgtctctctattgtcatgccccaaaagcaaaggatatc
gatgccctagagtcgaagctcgggtataacttctccaccaaaggtttattgttggaggca
ataacgcatgctgcccaaacggaaggaggcgttcactattcctatgagcgcctcgagttt
cttggtgatgctgtgctggacatacttgttacacgtcatctgtacgagagccacagcaaa
gtcgaccccgggctgctcacagacatgcgttctgcatcggtgaataatgacaatttcgcc
ctttctgcagtgagacggaaccttcatccacatcttcagcgcgtctcctcgttgctcaag
gatcaaatttcggagtttgtcagtcttgtatccaccatgagcacctcagcattgacacca
gatatcaaaggtcctaaggtgcttggggacttggtggagagtatcgctggtgcagtgctt
atcgattctaagctcgatctggatgaagtttggagagtcttcaaacccatactatcgcct
ctcgtgactcctgagaaactcgaactggccccttcgcgcgagctgactgagctgtgcgac
tctctcggttacttcatcaaagagcattacttaacggaaagtgatcttgtgcacgcgaga
ctgaagctgcagctcgaaaccgtgctcttaaatggacacggttccggacctacctcaaaa
gctgcaaagggaatggcagctcttcagctattacagaaattagagtcgaggggaataaga
tcatccaagcggccaaagcacgactctgattcagagccccctctgcttccaaagcaagag
agggacgtagattcatccgggacagagtgctcgtctcaaaaggcggacgttccagtgatt
ccacagatcgagacgaagaaaggggggcctcggaactcactctacgccctatgcaagaaa
ctgcagtggccaatgcctagttttgaaacaacagagacaaaatcaagaacggccttaacg
tttggagacatgacgagcttctgcagcttcgagtcacgaatcagcttgaccatacctgac
tctggcaaactggagctcagcggcgaggccagaggcgataagaagagctcgtacgacact
gctgcaattgcgatgctgcgtgaactcgagagacgggagaggatcagaataggcgaatga
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integrated database retrieval system
