Salvia hispanica (chia): 125191154
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Entry
125191154 CDS
T09851
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
shis
Salvia hispanica (chia)
Pathway
shis04142
Lysosome
shis04144
Endocytosis
shis05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125191154
04142 Lysosome
125191154
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125191154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125191154
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shis04147
]
125191154
Membrane trafficking [BR:
shis04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
125191154
Exosome [BR:
shis04147
]
Exosomal proteins
Proteins found in most exosomes
125191154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
IcmW
Motif
Other DBs
NCBI-GeneID:
125191154
NCBI-ProteinID:
XP_047944597
LinkDB
All DBs
Position
5:complement(29442596..29454384)
Genome browser
AA seq
1706 aa
AA seq
DB search
MAAANAPITMKEALTLTSLGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMSMPSQ
PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEAKAKMKSHQMPEQVVFWKWI
TPKMLGLVTQSSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLFSVDQQRSQALEAHAASFASFKVAGNDKDSILISFASKSSNAVQVTS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISNKYGLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTSEASSIGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPETVSKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIFIKARVTPKVVAAFAERQEFDKILIYSKQVGYTPDYLFLLQTILRSNPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHAHLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRVAQLCEKAGLYVRALQHYSELPDIKRVIVNTHAI
EPQALVEFFGTLSKEWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIRLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKAKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRAPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDGDLWAKVLDPENEFRRLLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVDAQLYE
EAYAIFKKFNLNVQAVNVLLDNIRDINRAVEFAYRVEEDAVWSQVAKAQLRDGLVGDAIE
SFIRADDATQFLEVIRASEDADVYHDLVKYLLMVRQKAKEPKVDSELIYAYAKIDRLGEI
EEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWGKLASTLVKLKQFQGAVDAARK
ANSAKTWKEICFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRHEKLMEHIKLFSTRLNIPKLIRACDEQQHWLELTYLYV
QYDEFDNAATTVMNHSPEAWDHMQFKDIIVKVANVELYYKAVHFYLQEHPDLINDVLNVL
ALRVDHTRVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDL
HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
SGKVDELVKDKIEAMKEEKAKKEEEKDVVLQQNMYAQLLPLALPAPPMPGMGGTGMGGGF
AAPPPPMGGMGMPPMPPFGMPQMGSY
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccaatgctccgatcactatgaaagaagccctcacgttgactagcttaggg
atcaatccgcagttcattacattcacaaatgtgacgatggaatctgataagtacatctgt
gttcgtgagactgctccacaaaacagtgtggtgattatcgatatgagcatgccatcacag
ccgctgcggcggcccatcacggctgattcagcacttatgaatccaaattctagaatattg
gcattgaaagctcaacttcctggaaccactcaagatcacctacaaatatttaacattgag
gcaaaagcaaagatgaagtcccatcagatgcctgagcaggttgtattttggaagtggata
actcctaagatgttgggtttagtcacgcagtcctcagtttatcactggtcaattgaaggt
gattcggaacctgtaaagatgttcgatagaactgcaaatttagcaaacaaccagataatc
aattataaatgtgatccttctgaaaagtggttggttttgattggtattgctcctggttcg
ccagagcggcctcaattggtcaaaggaaatatgcagctgttttccgtggatcagcaaaga
agtcaagctcttgaagctcatgctgcatcatttgcttctttcaaagtagctgggaatgat
aaggattccatccttatttcttttgcctcaaaaagctctaatgcggttcaggtgacatcg
aagttgcatgttattgagcttggtgctcagccaggaaaaccatcttttactaaaaaacaa
gcagatctgttcttccctccagactttgctgatgattttccagtagccatgcagatatca
aataagtatggcctcatatatgtgattacgaagctcggattactctttgtatatgatcta
gaaactgccacagcagtatacagaaatcgaattagtccggatcccatttttctgacatca
gaagcttcatctattggaggtttttatgcgattaacaggcgagggcaggtgttacttgct
acagtaaatgaagcaactattgtaccttttgtcagtggccagttaaacaatctggagctt
gccgtcaatcttgctaaaagaggaaacctccctggcgctgagaatttggttgtccagcgg
ttccaagaattatttgctcagaccaagtataaggaagctgcagagctggctgccgaatcc
ccccaaggcatcctccggacacctgaaactgtctccaaatttcagagtgttcctgttcaa
gctgggcagacaccgccattgctgcagtattttggaactctgttgactaaaggaaagctt
aatgcatttgagtctcttgagttatctcgtcttgttgtcaaccaaaacaaaaagaattta
ttagagaactggttggctgaagacaaactggagtgtagtgaggaactgggagaccttgta
aagacggttgacaatgaccttgccctgaagatatttatcaaagctagagttacaccaaaa
gttgttgcagcatttgctgagcgtcaggagtttgacaaaatattgatatactcaaagcag
gttggctatactcctgattacctgttccttctgcaaacaattctccggtctaatcctcag
ggagctgttaattttgcccttatgatgtctcaaatggaaggaggatgccctgttgattac
aacaccattaccgatctatttcttcagcggaatatgattcgtgaagcaactgcgtttctg
ttggatgtcctgaaaccaaatctaccagagcatgcacacctgcaaactaaggtcctcgaa
atcaatcttgtgacttttcccaatgtggctgatgctatattagcgaatgggatgtttagt
cattatgacagaccacgcgttgcacaactctgtgagaaagcagggctatacgtgcgagca
cttcagcattattcggagctgcctgatattaagcgtgtcattgttaatactcatgcgatt
gagccacaggcacttgtggaattcttcggcactctttccaaagaatgggcactagagtgc
atgaaagatcttctacttgtcaatttaagaggaaaccttcagattattgtccagactgct
aaagagtactgtgaacaattgggagttgaagcatgcataaggctatttgagcagttcaag
tcctatgaaggattatatttcttcttggggtcgtacttgagctccagtgaggatcctgac
attcatttcaagtacattgaagcagctgccaagactggacagattaaagaggtcgagcgt
gttacaagagaatcaaatttctatgatcctgaaaaggctaagaactttctaatggaagca
aaacttcctgatgctcggccgcttatcaatgtgtgtgaccgctttggttttgttcctgac
ctcacacattacttgtacaccaacaacatgctccgttacattgaaggatatgtgcagaag
gttaatccaggaaatgctccactagttgttggacagctcctagatgatgagtgccctgaa
gatttcattaaaggcctgattttatctgtccgttcgctgcttccagttgagcctctggtg
gaagagtgtgaaaaaaggaaccgacttcgcctgcttactcaatttttggagcatcttgta
agtgaaggaagccaagatgtgcatgtccacaacgctctgggtaaaatcattattgatagc
aacaacaatccagagcactttctcacaacaaacccgtactatgattcacgtgttgtgggt
aaatactgtgagaagcgtgctcccacccttgctgttgtcgcataccggaggggacaatgc
gatgatgaacttattaatgtgactaataagaattcattgttcaagctgcaggccaggtat
gtagttgagaggatggatggtgatctctgggccaaagttcttgatccagaaaatgaattt
agaaggctgctcattgaccaagttgtatccactgctttgccagaaagcaaaagccccgag
caagtgtctgcagctgttaaagcgtttatgactgcggatcttcctcatgagctaattgaa
ttgcttgaaaagattgtgcttcagaactcagctttcagtgggaacttcaacttgcaaaac
ttacttatcttgactgcaatcaaggctgatccatctagggttatggactatgtcaataga
ctcgataactttgatggcccggctgttggagaggttgctgtggatgctcaattgtatgaa
gaagcctatgccattttcaagaaatttaatttgaatgtccaggctgtaaatgtgttgttg
gataatattcgagacatcaaccgtgctgttgaatttgcttaccgtgttgaagaagatgct
gtctggagtcaagtggctaaagctcaactaagggatgggctagtgggtgatgcaatagaa
tcatttattcgtgctgatgatgcaactcaatttttggaagtcatccgagcttcagaagat
gcagatgtttatcatgaccttgtgaagtatcttctcatggttagacagaaagcaaaggag
cctaaagtagacagtgagcttatttatgcttatgccaaaattgataggctgggtgaaatt
gaagaatttattcttatgcctaatgtggctaatctgccaaatgttggtgatcgcttatac
gatgaagctctatatgaggctgcaaaaattatttttgctttcatatccaattggggcaaa
ttggcaagtactttagtgaaattgaagcaattccaaggtgctgttgatgctgcgcggaaa
gctaatagcgcaaagacatggaaggaaatatgctttgcctgtgttgatgctgaggagttc
cgcttggctcaaatttgtggcctcaacattatagtacaggttgatgaccttgaagaagtt
agtgagtattatcagaatagaggatgctttaatgagctcatatcacttatggagagtggt
ctaggattggaacgtgcacacatgggcatctttacagagctgggtgtcctttacgctaga
tatcgccatgagaaactcatggaacacataaaattgttttctactcgtctcaatatcccc
aaactgattcgagcatgtgatgaacagcagcactggctagaattaacttacttatatgtt
cagtacgatgagtttgataatgcagcgacaactgtgatgaatcattctccagaagcttgg
gatcacatgcaattcaaagatattattgtcaaagttgccaatgtggagctatattacaaa
gctgtgcacttttacttgcaagagcaccctgatctcatcaatgatgttctcaatgtgctt
gctcttcgtgtcgatcatacccgagttgtggacataatgagaaaggcgggtcatctgcgt
cttgttaagccatacatggtagctgttcaaagcaataatgtgtctgccgtcaatgaagct
ctcaacgagatctatgttgaagaagaagattatgagaggctacgtgaatcaattgacttg
catgataactttgatcagatcggacttgctcaaaagattgagaaacatgagcttcttgaa
atgagacgagttgctgcatacatttacaagaaggcagggaggtggaagcaatcaattgct
ttgtcaaaaaaagacaacctttacaaagatgcaatggagactgcttcacaatctggtgat
cgtgaacttgcagaggagttgcttgtttatttcattgaacagggtaagaaggagtgtttc
gcttcgtgcctctttgtttgctacgatttaatccgcccagatgttgcactggaactagcc
tggatgaataacatgattgattttgcattcccgtaccttttacagtttatccgggaatac
agtggcaaagttgatgaattagttaaagacaagattgaggctatgaaagaagagaaagct
aaaaaggaagaagagaaagatgttgtcctgcaacagaatatgtatgcacaactacttcct
cttgctttgccggcccctcccatgccaggcatgggaggtactggaatgggaggggggttc
gctgcccctcccccacccatgggtggtatgggcatgcctccaatgcccccatttggcatg
ccacaaatgggatcctactga
DBGET
integrated database retrieval system
