Salvia hispanica (chia): 125191207
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Entry
125191207 CDS
T09851
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-II isoform X1
KO
K13148
integrator complex subunit 11 [EC:3.1.27.-]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125191207
Spliceosome [BR:
shis03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
125191207
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B_6
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
Arm_vescicular
Motif
Other DBs
NCBI-GeneID:
125191207
NCBI-ProteinID:
XP_047944675
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Position
1:47500191..47509114
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AA seq
631 aa
AA seq
DB search
MAIECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMRYKDLRQYPDFSLISDSGDFTSSL
SCVIITHFHLDHIGALPYFTQVCGYEGPIYMTYPTKALAPLALEDYRNTLERGGEKAQFT
SEHIAECMKKVTAVDLKQTIHVDKDLQIRAYYAGHVLGAAMFYAKVGDAALVYTGDYNMV
PDRHLGAAQIDRLQLDLVISESTYATTYRDSKYVQEREFLKAVHKCVTSGGKVLIPSNAL
GRTQELCMLLDDYWERTNLKVPIYFSSGSTIQANLYHKILINWASQNVKDTHARHNAFDF
RNVRIFDRSLINAPGPCVLFASPGNLNGGFSLEILKQWAPYEENLVMLPGSCSNGIIGSK
LMSAKIPTQIKLDENVKTDVRCQIHKLAFSAHTDGKGIMDLVEFLSPKHVLLVHGEKPKM
AALKEKIESELGIECCYPANNETVTIPSTHHIEAGVSDEFLQSCLTPNFKFWKTNVGSDK
RTPPILQVHDDRVGQGMLTLQNPRVFTQNELRDVLGVENHQVKFVHCCSAAYDSDISNAA
SDWSPSTSQKIFLLQLLFGLVSGDFPDCIMHDCQKGIQVGSFVASLCSREECPSSNVDAL
HFRCTWSVTEEELAWKVISLVKNVKLSREST
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggctatcgaatgcctagtgctcggcgcggggcaagaagtggggaagagctgcgtggtt
gtgacaataaatggcaagagaataatgtttgattgtggaatgcacatgcgctacaaagat
cttcgccaatacccagatttttctttgatttcagattctggtgactttaccagttcactc
tcttgtgtgatcattacacacttccacttggaccacattggagcccttccatattttact
caagtttgtggatatgagggccccatttacatgacgtatccaacgaaggccttagctcca
ctggcactcgaggattatcgaaatacgcttgaaagaggaggagagaaagcgcaatttact
tctgagcatattgcagagtgtatgaaaaaagtgactgcagtggatctaaaacagactatt
cacgttgataaagaccttcagattcgagcctactatgcagggcacgttcttggggctgca
atgttttatgccaaagtgggtgatgctgctttggtatatacaggtgactataatatggtg
cctgatagacatcttggtgcagctcaaattgaccgactgcagctagaccttgttatatcc
gagtcaacttatgcaacaacataccgtgattcaaaatatgtccaagagagggaatttcta
aaagcagttcacaagtgtgttactagtggaggcaaggttctaattccttcaaatgctctt
gggaggactcaggaactgtgtatgctactagatgattattgggagcggacaaaccttaag
gtgccaatatacttctcttcaggttcgaccatacaagcaaatctgtaccataaaattctc
atcaattgggcaagccaaaatgtcaaggacactcatgctagacacaacgcatttgacttc
agaaacgttaggatttttgatcgttccttgataaatgctcctggaccttgtgtccttttt
gcttcacctgggaaccttaatggtggcttttctttggaaattctcaagcagtgggctcca
tacgaagagaatcttgtcatgctaccaggatcttgttcgaatggaattataggaagcaaa
ttgatgtcagccaagataccgacacaaatcaagcttgatgagaatgtcaaaaccgatgtg
cgatgccagattcataagttagcttttagtgctcataccgatggcaagggaatcatggac
cttgttgaatttctctcgcctaagcatgtgctgcttgtacatggagaaaagcctaagatg
gctgcgcttaaagaaaaaatagagtctgaattgggaattgaatgctgttatccagcaaac
aatgaaactgtgaccattccttcaactcatcacatagaagctggtgtgtctgatgaattt
ctgcagagttgcctgacccccaatttcaagttttggaaaaccaatgttggctcggacaag
agaacacctcctatattgcaggttcatgatgaccgagtgggtcaagggatgttaaccctg
cagaatcctagagtctttactcaaaatgaattgagggacgtgttaggagtagaaaatcat
caagtgaagtttgttcattgttgctcagcagcatatgattcagatattagcaatgctgca
tcagattggtcgccttcgacgtctcaaaagatttttttgctgcagctgttgttcggatta
gtttccggagattttcctgattgtattatgcatgattgccaaaagggcattcaggttggg
tcgtttgttgcctctttgtgctcgagggaagaatgtccgagcagcaacgtggatgcacta
cattttcgctgtacatggtcggtgactgaggaggaacttgcttggaaagttatttcacta
gtgaagaatgtcaagttgagcagggaaagcacttga
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