KEGG   Salvia hispanica (chia): 125191837
Entry
125191837         CDS       T09851                                 
Name
(RefSeq) cyclin-H1-1 isoform X1
  KO
K06634  cyclin H
Organism
shis  Salvia hispanica (chia)
Pathway
shis03022  Basal transcription factors
shis03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125191837
  09124 Replication and repair
   03420 Nucleotide excision repair
    125191837
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shis03021]
    125191837
   03400 DNA repair and recombination proteins [BR:shis03400]
    125191837
Transcription machinery [BR:shis03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     125191837
DNA repair and recombination proteins [BR:shis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     125191837
SSDB
Motif
Pfam: Cyclin_C_2 Cyclin_N TFIIB RB_B Ku_C
Other DBs
NCBI-GeneID: 125191837
NCBI-ProteinID: XP_047945216
LinkDB
Position
6:47085613..47089550
AA seq 327 aa
MADFATSTHRAKWIFTPQALKEKYKEANKRAKQALEKYGATRMEVDVDGSFSYAEPQTDA
KASADKHSRPKALKIEEEQLLRAFYEFKIQDVCDALTLPHKIQATALIYFKRFYLQWSVM
EHHPKNIMLTCIYAACKAEENHVSAEQLGIGIEQDHHMILDNEMLVLQSLGFDLIVYSPY
RPLQGFITDMEEFGDANERQPEIMKNFHESAKAEVDRIMRTEAPLLFPPGQLALAALRRS
CELHKAIDFDRYLKNVHYRQHPAHGISELYLNMNAIDVLINKLETPTSKDVKHIDRKLKS
CLDPASHEKSKKRKHRSKEGSSEMHVM
NT seq 984 nt   +upstreamnt  +downstreamnt
atggcggattttgcgacttcgacacacagagcgaagtggatattcacgcctcaggctctt
aaggaaaaatacaaggaagctaataaacgagctaagcaagcgcttgagaagtatggagct
acacggatggaagtagatgttgatggatctttctcttatgctgaaccacaaactgatgca
aaggctagtgctgacaagcattcacgtccaaaagctctcaagatagaagaagaacaactt
ttgcgggccttctacgagtttaaaatccaagatgtttgtgatgccctcacgcttccacat
aaaattcaggccacagctctaatctacttcaaaaggttctatttgcaatggtccgtgatg
gagcatcatccaaagaatataatgttaacatgcatatatgctgcttgtaaggctgaggag
aaccatgtgtcagcagagcagcttgggatagggatcgaacaggatcatcatatgattctt
gataatgaaatgctcgtccttcagagtctaggatttgacctcatagtctattcaccatat
cgaccacttcaaggctttatcactgatatggaggagtttggtgatgcaaatgagaggcag
cctgagattatgaagaattttcatgaatctgccaaagctgaagttgatagaattatgcgt
acagaagctccccttctattcccaccagggcagctagcattggcagctttacgaagatct
tgtgagttgcataaagctatcgactttgacaggtacctgaaaaatgtgcactatcggcag
catccagctcatggcatttcagagctctatcttaacatgaatgcaattgatgtgttgatt
aataagctcgagacccctacctcgaaagatgtaaagcacatcgataggaaacttaaatca
tgcttggatccagcttcacatgagaagagcaagaaacgaaagcacagatcaaaggagggt
tcgagtgaaatgcatgtcatgtaa

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