Salvia hispanica (chia): 125192023
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Entry
125192023 CDS
T09851
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1 isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125192023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125192023
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
125192023
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
125192023
NCBI-ProteinID:
XP_047945431
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Position
6:29946871..29949082
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AA seq
213 aa
AA seq
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MGDHSIPEENGGDPSSSTALDIYPLSCYYFGSRDSVSLNTETRADRLLRLTANYDAVGMR
SCVAAVIVVELFKHPHLLLLQVQNSIYRLPGGRVRQGESDTDCLKRKLASKLSAGEDGRG
PDWEVGECLGMWWRPDFESVLYPYLPPNIKWPKECTKLYLVKLPPSRRFIVPKNSRLLAI
PLCQLHENDETYGPIISGVPQLLSKYSFNMVEP
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatcactcaattccagaagaaaacggcggtgatcccagcagctccaccgccttg
gatatttaccctctcagctgttactatttcggctccagagattctgtttctctcaacacc
gaaacccgcgccgatcgccttcttcgcctcacagctaactatgatgccgttggaatgagg
agctgcgtggctgccgtgattgtggttgaacttttcaaacacccccacctcttgttgcta
caagtgcagaactccatctacagacttcctggtggacgtgtacgacaaggtgaatcagat
actgactgcttaaaacgcaagctcgcaagcaagctgtctgctggtgaagatggccgtggt
cctgattgggaggttggagaatgccttggtatgtggtggagacccgactttgagtccgta
ctttatccgtatttgccaccaaacataaagtggcctaaagagtgcactaaactctatctt
gtgaagctgccaccaagcagaaggtttattgtgcctaagaattcacgacttcttgcaatc
ccgttgtgtcagcttcatgagaacgatgagacttatggtccaataatctctggagtccca
cagttgctatccaaatattccttcaacatggtagaaccttaa
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