Salvia hispanica (chia): 125192057
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Entry
125192057 CDS
T09851
Name
(RefSeq) transcriptional elongation regulator MINIYO isoform X1
KO
K20826
RNA polymerase II-associated protein 1
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125192057
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
125192057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_N
RPAP1_C
Motif
Other DBs
NCBI-GeneID:
125192057
NCBI-ProteinID:
XP_047945467
LinkDB
All DBs
Position
6:complement(3699425..3706122)
Genome browser
AA seq
1583 aa
AA seq
DB search
MREYASRESKNLKSKMLGATSIQIGEDDVSRLVGGIVEKGFSEARQTRPLPPPTGPRPTV
LPFPLARHRSHGPHWAPNVGNSNGKDSEDELAGEEEDFEGRAVAAAANPLQRKEKRGLDF
SRWREMAKKAGSSGFHEKEEGWCSNGDEVEPKETKMASNGDAQFQSMTMTSNVSTIREAK
GEAKDASHLASDKEFYSSEYGKNGNNVQTMQYQQDGIAESDGNTVVEKASTWQNGLRKEV
DLKRENMPKPHTASVFSGQASVGGEESSLQSQIDAENRARIANMSADELAEAQAEIMAKL
NPKLIDALKKRGQGKDKRQKSYETDVTGSASVDMQHEEALPKISGNTVSHEPMEIETEST
LKDKEDNVSTNASPDKGSIWNAWSKRVERVRDVRFSLDGNIIGFGMESNIGQFNSNNVSQ
RDYLRTEGDPGAGGYTIKEALALARSVVPGQRTLALSVIAAILNRAISKIIQNQVDSVSN
IADSVEPADWVAIWAYALGPEPELALLLRISFDDNHNSVVLNCAKAILSALSYDTNKILF
DMLERTPTYSKDVSTAPVFRSKPDVNVGFLRGGFWKYNTKPSNILRCGEEMMDDEAEGEG
EHTIQDDVVVAGQDFAAGLVRMGTLERICYLLQTDPAAPLEECLISILIALARHSPTCAA
AVLDCGRLVQTIAGRFTSNEQMEINGSKIKSVTLFKVLAQHGRKNCSTFINNGIFRQLTW
HLYRYPFSLDLWVKSGRESCILSSAMLVEQLRLWKVSVNYGYSISDFSDLFTSLCAWLSV
PTFEKLSSYDVMSEYCAITREAYLLLGVMANRLPNFYSSMQEPPADTVQDTDPWSWRHFG
PIIDSAVEWIQVKNIAFVSRLFNSQSNDGERICFQDSKVNSLLWIISSVLSMLASVLKAV
IPEDFTSLPDGRLPWLPEFVPKIGLAFVKNGYIRSGGSSDPSENGSFVKYLCDLRLQGSP
EFAISSQCCLQGFFQIADSVDKLVTHANLDIHSARVGYNNFSRDDKILANGILKSCSTEI
QYLLSTSMEAITSDWQFLRPIEMFSRGGPAPGVGVGWGASAGGYWSLNSLLAQQDAGLLV
YLLEAFGIPSTVDPSEAEEMDCTMQKIECILTACLIVGPWSSSVLDKLLKIIFQVPVLKH
LSYGIHKFLSLRKGYSSFKWNYDDEEYALISNVLASHFRTRWLGAKKKRKAMPETNHPSQ
KSTKKKVRFMETIHEDMNATSEAGEVMSSSSSLILEWARQRLPLPEHWFLSAISTIQLNN
NTCPPSASHGEIFSEVASDIVEVAKSGLFFLLAIEAIPTSLSSEFRSPAKCVPVVWKLHA
MSATLLSGMGVLEDEKSRTVYETLQNVYGGVLDEKRSSDVLGHTGVERLKFASDIHDSYP
TFIETLVEQFSAESYGDVIFGRQVAMYLHKSVEDSARLAAWNTLSNARVLELLPPLHKCL
AKADGYLEPIEDNESILEAYVKSWTSGALDKAANRGSVAFSLVLHHLSSFIFGSAGDATL
SLRNKLAKSLMRDYSRRQQHEGMMVKLICDKKPEPEPQASATAASSLPMSAIEKRLQLLT
KICDGCAPQVAKLEACIRKERSE
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgagtatgcaagcagagagagcaaaaatctgaaatccaagatgttaggagcaact
tcaattcaaattggggaagatgatgtttcgcggctggttggtggcatagttgaaaagggc
ttctccgaagctcggcagactaggccgttacctccgcccacagggccgcgccccaccgtg
ctgccctttccgttggcgcgccaccgctcacacggcccgcattgggctcctaacgttgga
aattcgaacggcaaagacagtgaagatgagcttgctggagaagaggaagatttcgagggg
agagcagtagctgctgctgctaatccattacaaagaaaagagaagaggggtttggatttc
agtagatggcgggagatggcaaaaaaagctggcagctcggggttccatgagaaggaagag
ggatggtgctcgaatggggatgaagttgagccaaaagagacaaaaatggcttctaatggt
gatgcacagtttcagtctatgacaatgactagtaatgtttcgacaatcagagaggcgaaa
ggagaagcaaaagacgcatcacatttggcaagtgacaaggagttttacagctctgaatat
gggaaaaatggaaataatgtccaaactatgcaatatcaacaggatggcattgctgaatct
gatggaaatactgttgtggagaaggcgtctacatggcagaatggattgaggaaagaagtg
gacctgaaaagggagaatatgccaaaaccacatacagcttctgttttctcagggcaggcg
tcagtaggtggagaagaaagtagtcttcaaagtcagatagatgctgagaatcgtgctcga
atagcaaatatgtctgctgatgaacttgctgaagcacaagctgagataatggctaagcta
aacccaaaattgattgatgcattgaagaaaaggggtcaaggaaaagacaagaggcaaaag
tcttacgagacagatgttacgggcagtgcatcagttgatatgcaacatgaggaagctttg
cctaaaatttctgggaacactgtctctcatgaaccaatggaaatagaaactgaaagtacc
ttaaaagataaggaagacaatgtttctacaaatgcaagcccagataaaggtagcatatgg
aatgcttggagcaaaagagttgagcgcgttagagatgtgagattttccttagatggaaac
attattggctttggtatggagtccaatattggccaattcaattcaaataatgtttcccaa
cgtgattatcttcgaactgaaggtgatcctggtgctggtggttacacaataaaagaagca
ttagcattagctagaagtgtggttccaggccaacggacacttgctttaagtgtaattgca
gctattcttaatcgggcaatttctaaaatcattcagaatcaagttgattctgtttctaat
attgctgattctgtggagcctgctgactgggttgctatttgggcttatgctctgggtccg
gaacctgagcttgctttattactgagaatatcttttgatgacaaccacaatagcgttgtc
ctcaattgtgccaaggccattcttagtgcattgagttatgatacaaacaagattttattt
gacatgttggagcggacaccaacgtattcgaaggatgtttctactgctcctgtattcaga
agtaaaccagatgttaatgttggttttcttcgtggtggcttttggaagtataatactaag
ccttccaatattcttcgttgtggtgaggagatgatggatgacgaagctgaaggtgagggc
gagcacactattcaggatgatgtagttgttgcagggcaggattttgctgctggtcttgtt
agaatggggactcttgaaaggatctgctatctcttacagacagaccctgctgcaccatta
gaagaatgcttaatatcaatattgatagctttagcaaggcattctccaacttgtgctgct
gcagttttggactgtggaaggcttgttcagacaattgctggaagatttacttcaaatgaa
caaatggaaatcaatggcagtaaaatcaaatctgttactctattcaaagtattggctcag
catggcaggaagaattgctcaacatttattaacaatggaatttttcgtcagctgacttgg
cacttgtaccggtatccattttctcttgatctatgggtcaagtccgggagagagtcctgc
atactttcatctgctatgctggttgaacaattgcgtttatggaaggtttccgttaattat
ggatatagtatttcggacttttctgacctatttacatcattgtgtgcatggttgagtgta
cctacctttgagaagttaagcagctatgacgtgatgagtgaatactgtgccatcacaagg
gaagcttatcttcttcttggagttatggctaatagacttccaaacttctattcaagcatg
caagaaccacccgcagatactgttcaagatacagacccttggtcatggagacactttggt
cctattatagattcggcagttgagtggatacaagttaaaaatattgcattcgtatcgagg
ctcttcaactcccagagtaatgatggtgagaggatctgtttccaggattcaaaagtaaat
tccttgctatggataatttcttctgttttaagtatgcttgccagcgtgctgaaagctgtc
atcccagaggactttacgagcttacctgatggccgattgccatggttgccagagtttgtt
cctaagattggacttgcatttgttaaaaatgggtatatcaggtctggaggatcaagtgat
ccttctgaaaatggctcttttgtaaagtatctatgtgatttgagacttcaaggaagtcct
gaatttgcaatatcttctcaatgttgtctccaagggttcttccaaatagcagattctgtt
gataagttggttacacatgcaaatctcgatatccattcagcacgagttggatataacaat
ttctcaagggacgataagattcttgctaatggtatactgaagtcctgttcaactgaaata
cagtatctgctgtcaacttcaatggaagcaattactagtgactggcaattcctgcggcct
attgagatgttcagtagaggcggccctgctccaggagttggtgttggctggggtgcctct
gctggagggtattggtccttaaattctttgttggctcagcaagacgcaggattgctcgtt
tacttgcttgaagcttttgggattccatctactgtggatccatcagaagccgaagagatg
gactgcacaatgcaaaagatagaatgcatccttactgcttgtttaattgtgggcccatgg
agtagctcagtccttgataagttactaaaaatcatcttccaggttcctgtactcaagcat
ctgagttatggcattcataagttcctctctcttagaaaaggatacagttctttcaagtgg
aactatgatgatgaagaatatgcactgatatctaatgttttggcctctcactttagaacc
aggtggcttggtgcaaagaagaaacgaaaagccatgcctgagaccaaccatccaagccaa
aaatctacaaagaaaaaggttcgttttatggaaactattcatgaggatatgaatgcgaca
agtgaagctggtgaagtgatgtcttcttcatcttcattaatattggagtgggctcgccag
agattgcctcttccggaacattggtttctgagtgcaatctccaccattcagttaaacaat
aacacatgtccgcccagtgcttctcatggtgaaatcttttcagaggtggcctcagacatt
gtagaagttgctaagagcggactctttttcctcctggctatcgaagccatccctacctct
cttagctctgagttccgctcacctgctaaatgtgttccagttgtttggaaactgcacgcc
atgtctgcaacattactttctgggatgggtgttctggaagacgagaaaagcaggactgtc
tatgaaaccttgcagaatgtgtatggcggagttcttgatgagaagaggtcttcagacgtg
ctcggtcacacgggtgttgagcgcctgaagtttgcatcagacatccacgatagctaccct
acattcatcgaaactctagtggagcagttctcagctgaatcgtatggtgatgtcatattt
gggaggcaggttgcaatgtatttacataaatccgttgaagattctgcaaggcttgctgcg
tggaataccttgtctaatgcacgcgttcttgagctcctgccgcctctacataagtgcctc
gcgaaggctgatggctaccttgaacccatcgaggataacgagagcatcctagaagcctac
gtgaaatcgtggacctctggcgcccttgacaaagcggcaaacaggggctcagtagcattc
tctctggttctgcatcatctttcatccttcatatttggcagtgctggtgatgctactctc
tcactgcgcaataaactcgcgaaatctctgatgcgcgactattctcgcaggcagcaacac
gaggggatgatggtgaaattgatatgcgacaagaaacctgagcccgagccgcaagcatcg
gcgacagcagcttcgtctctacctatgtcggcgatagaaaagaggttgcaacttctgaca
aaaatttgtgatggatgtgcgcctcaagtggcaaagcttgaagcctgtatcagaaaagag
cgttcagaataa
DBGET
integrated database retrieval system
