Salvia hispanica (chia): 125192079
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Entry
125192079 CDS
T09851
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
shis
Salvia hispanica (chia)
Pathway
shis03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125192079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125192079
03036 Chromosome and associated proteins [BR:
shis03036
]
125192079
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125192079
Coactivators
SAGA/TFTC/STAGA complex
125192079
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125192079
STAGA complex
125192079
TFTC complex
125192079
SAGA complex
125192079
SLIK complex
125192079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Cytochrom_D1
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_NWD2_C
PALB2_WD40
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
125192079
NCBI-ProteinID:
XP_047945491
LinkDB
All DBs
Position
6:33843919..33850375
Genome browser
AA seq
667 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLALQQEKQQNSKGSNASSTAQIDPDIAKQILSLSEVD
GPAQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEARSFFNSFRG
DHEVMHTRDLQKLEGVLSPSHLEEMEFAHSLRQSKVGIKICQYSYDLLLQYLHKSQSITM
LGIVNEHINFQVSPGQPSSIADDAEYVTFFGSEQDAANLINQKEIHWGLLEDTLEERLEK
MGAPNMDSDKADGEGELEENKKRSDGGKQGTTPKKLKKDKVVVGATAKAHRSDSVAASGA
PRVKPELALPEIPVEVEQSILEDLRNRVQLSSMALPSVSLYTFINTHDSLNCASISHDGS
LVAGGFSDSSLKVWDMAKLGKQNVTSPLQGENDLATNEPSSSAGGRNYTLFRGHAGPVHS
ATFSPFGDFILSSSSDSTIRLWSSKLNANLVCYKGHNYPVWDVKFSPLGHYFASASHDRT
ARIWSMDRVHPLRIMAGHLSDVDCVQWHANCNYLATGSSDKTVRLWDVQSGECVRIFIGH
RSMILSLAMSPDGRYMASGDEDGAIMMWDLASGRCVAPLVGHGSCIWSLAFSCEGSLLAS
GSADCTVKIWDVATSSRVPKSDENGKNGNVSRLRSLKTLPTKSTPVYALQFSRRNLLFAA
GALSKQS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaagagatcgataaagtggtactcgcgtacttggacaagaggggtttcaag
caagcgggcctcgctcttcagcaagagaagcagcaaaacagtaaaggcagcaacgcctcc
tccactgcgcagattgatcctgatattgcgaaacaaattctctctctctctgaagtggat
ggtcccgctcagtaccaggaaggttatagcaagctacggtcttgggcttatagttctctg
gatcagtaccagcacgagttggttagagtcttgtatccagtatttatccatgcattcatg
gatcttgttgcaaagggtcatatccaagaagcccgatctttttttaatagctttcgagga
gaccatgaagtcatgcatacacgcgaccttcaaaagttagaaggtgttctttctccctca
catctggaggaaatggaatttgcacattctctaagacagagcaaagttggcatcaagatt
tgccaatattcctatgatctacttctacaatacttgcacaaatctcaatcaattacaatg
cttgggattgtcaatgaacacatcaactttcaagtttctcctgggcaaccgagctccatt
gctgatgatgctgaatacgtcacgttttttggaagtgaacaggacgctgctaatttaatt
aaccagaaagaaattcactgggggttgcttgaagatactttggaagaaaggttggaaaag
atgggggcgccaaatatggattccgacaaagcagatggagaaggtgaactggaagaaaat
aagaaaaggtctgatggtggcaagcaaggcactacacccaaaaagttgaaaaaggataag
gttgttgttggtgccacagcaaaagctcatcgttctgatagtgttgctgcgtctggagca
ccacgtgtaaaacctgagctagcattgccagaaataccagtagaggtggaacagtctatc
cttgaagatttgagaaaccgtgtgcagctgagtagcatggcattgccttctgttagctta
tatactttcatcaacactcatgacagcttgaattgtgcttcaatatctcatgatgggtca
ttggtagctggtggattttcagactcatcattgaaggtttgggacatggcaaagcttggg
aaacagaatgtaacctctcctttgcagggtgaaaatgatttggctaccaatgagccaagc
tcaagtgctgggggaagaaattacacattatttcgaggtcacgctggtcctgtgcattct
gccacttttagtccgtttggtgatttcattctgtcttcttcatcagattctacaattcga
ctatggagctcaaaactgaatgcaaatcttgtctgctacaagggtcataattaccctgta
tgggatgtaaagtttagtccacttggccactattttgctagtgcttcacatgatcgcacg
gcaaggatctggtcaatggacagagtgcatcctctaaggataatggcaggtcatttatct
gatgtggattgtgtgcaatggcatgcaaattgcaactatcttgctaccggatctagtgat
aaaacagtgcgcctatgggatgtccagagtggcgaatgtgttagaatattcattggtcac
agaagtatgatcttaagtttggcaatgtcacctgatggtcgctatatggcatctggtgac
gaagatggtgcgataatgatgtgggatctcgcatctggtcgctgcgttgccccattagtc
ggtcatggctcttgcatttggtcactggctttcagctgtgaaggttcgcttctagcttct
ggttctgctgattgcacggtgaaaatatgggatgtagctacaagctcaagagtgccaaaa
tcagatgagaatggcaaaaatggaaacgtaagcagactgagatctctgaaaactttgccc
accaaatctactcccgtttatgctctgcagttctccagaagaaaccttttatttgctgcc
ggcgctctctcaaagcagtcgtag
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