Salvia hispanica (chia): 125192249
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Entry
125192249 CDS
T09851
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125192249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125192249
03019 Messenger RNA biogenesis [BR:
shis03019
]
125192249
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125192249
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125192249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
125192249
NCBI-ProteinID:
XP_047945729
LinkDB
All DBs
Position
6:complement(14438782..14445583)
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AA seq
936 aa
AA seq
DB search
MDRFQNPVPLSSVGFSKPPPIQSDGAGKKPLPPLLLDRFRAMIKDLEEELKVFDGAAVLP
SETDEIVQLYEIILSELTVNSKPMITDLTVLAEEQRAHGEAIAGAICSRIIEVSVDYKLP
SLYLLDSIVKNIGKEYIKFFSARLPEVFCEAYTQVHPNMHKAMRHLFGTWSTVFPVSVLQ
KIGTKLKFSPPVNGHSSGVSSSRASESPRPAHGIHINPKYLEAQRQFGQSSVDPFRTEGV
SSTGRTGLTASGVDAVKVSLSSASRIKRSSPPCGLGPAGSLSPAGPSIKDFGMDSSTKRL
TVRQSPSHPGSDYGPSKVVIKEETSEWRKRNLQGNPKPQLKAVAAAAAYKCSGGIDLRGP
RALISAYGMDEREKHLNNKHHKAEELDSHGAEQKIGIRTWQNTEEEEFDWEDMTPSLADR
MQSSDTYSSLPSLGNLTGRQSVVADHAARLSAPGSVNNVAGASNFMSHIPPNFGRESLIL
PPQQSQGQFNANGSGSLAESRNVLTGGEQKSQAGNFSNIDWKSGRPAGVVSTFGSTYDSL
APEIRSGDAALRNTWNPANFQNSQIMPSHSSLPQQMLFRGQFGMKNASNIADQMHSDPGS
SRSMPPVTLSQISSIRPGMVPVNLHGATQPNFSMARESRQNLHLPYSVPGSSNTMVPPLN
YRYLAQGQGPAGTTPHMSFQVPGATLQPPPRGPHPGTTQAFPIGRNNGQVAPNGSVRNGL
SGLISSLMVQGLISLPKQDSVGVEFDQDSLKVRHESAITSLYTDLPRQCRTCGHRFKDQE
EHSKHMDWHVNKNRTLKNRETKPSPKWFVDINMWLSGTESLGTESAPGFLPIENTVEKEE
DEEMAVPADDSQKACALCGEPFDDFYSDEMEEWMYRGAVYMYAPAGLAVGMDTSQLGPIV
HAKCRPDSHGVSSENYEDETESTKEGSKRKKLRSHS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggaccgatttcagaaccctgtgcctctgagcagcgtgggtttcagcaagcctccacca
atccagagcgacggcgcaggtaagaagccacttccgcctttgcttctcgatagatttagg
gccatgatcaaggatctcgaggaagaacttaaggtttttgatggtgcagctgttttgccg
tcggaaaccgacgaaattgttcagctttatgagattattttgtcggagctcactgtcaat
tcgaagccaatgattactgatctcactgtacttgccgaagagcagcgagcacacggcgag
gccattgctggtgccatttgctcccggattattgaggtttctgttgattataaactgcct
tctttataccttttggatagcatcgtgaagaacataggcaaggaatacattaaattcttc
tctgctcggttgcctgaggttttctgtgaggcttacacacaagtccaccccaacatgcac
aaagcaatgcgccatctgtttgggacatggtctacagttttcccagtgtcagtgcttcaa
aagattgggacaaagttaaagttttctcctcctgtaaatggtcattcttctggagtaagc
tcttcaagagcttctgaatctcctcgaccagcacatgggatacacataaaccccaagtat
ttggaagcacaacggcagtttggacaatcatcagtagatccttttagaactgaaggagtg
agttcaactggtcgtacaggccttacagcttctggtgtagatgctgtaaaagtgtctctc
tcatcagcttctaggataaaaaggtcctcccctccttgtggacttgggcctgcaggatca
ttgtctcctgctggtccttcaatcaaggattttggcatggatagttccacaaagagactc
actgttaggcagtcaccatctcatcctggaagtgattatgggccaagcaaagtggtgatc
aaagaggagacaagtgagtggcggaaaagaaatctgcagggcaatcccaaaccacagctt
aaagcagtagcagcagctgctgcgtataaatgtagtggtggtattgatcttcgaggaccg
agagcattgattagtgcctatgggatggatgaacgagaaaaacatttaaacaataaacat
cataaagctgaggagttggattcacatggtgctgagcaaaagataggtatcaggacatgg
caaaacactgaagaggaagaatttgattgggaagacatgaccccatctttagcagatcgg
atgcagtctagtgatacatattcatctcttccatctctaggtaacttgaccggaagacag
agtgttgttgcagaccatgctgcacgtttgtctgctcctggatctgttaacaatgttgct
ggcgccagtaattttatgagccatattcctcctaattttggccgagaatccttgatttta
ccgccacagcagtctcagggccaatttaatgccaacggaagtggttctctagctgaaagt
agaaacgttttaactggtggtgagcaaaagagccaagctggaaatttctcaaatattgat
tggaagtctggtcggcctgctggtgttgtttcaacatttggctccacctacgactcactg
gctcctgagattcgatcaggtgatgctgctttaagaaatacatggaatcctgcaaatttt
caaaactcacagattatgccatcgcactctagtcttcctcaacaaatgctatttagaggt
cagtttggtatgaagaatgcttccaatattgccgatcaaatgcattctgatcctggtagc
agtagaagcatgccaccggtgaccttgtcccaaatttctagcattcgtcctggaatggtt
cctgtaaatttgcatggtgcaacacagccaaacttttcaatggctcgagagtccagacaa
aatttgcacttgccttattcagttcctggttcatcaaatacaatggtaccacctttgaac
tatagatacttagctcaagggcagggtcctgctggcactactccacatatgtcatttcaa
gtacccggggcaaccttacagcctccaccaaggggtcctcatccagggacaactcaagca
tttcctattggtcgaaataatgggcaagttgctcctaatggctccgtgaggaatgggctt
tcagggttaatatcttctttaatggtccaaggtttaatatctttaccaaagcaggattct
gttggagtggagtttgatcaagacagtcttaaggtgcgtcatgagagcgcaattacgtct
ttatatactgatcttccaaggcaatgcagaacttgtggccatcggtttaaagaccaagaa
gagcacagcaagcatatggattggcatgtaaacaagaaccgaactctaaaaaaccgcgag
acaaaaccttctccgaagtggtttgtagacataaacatgtggctcagtggcacagaatcc
ttgggaactgaatcagctccaggttttttgcccattgaaaatactgtagaaaaggaggag
gatgaagaaatggctgttcctgctgatgatagccagaaggcttgcgcactatgtggagag
ccctttgatgatttctatagtgacgaaatggaagaatggatgtataggggagccgtatac
atgtatgcaccagctgggttagcagttggaatggacacatcgcaattaggtcctatagtg
catgccaaatgtagacctgactcacatggggtttcatcggaaaattatgaggatgaaacg
gaatcaactaaagaaggtagtaaaaggaaaaaactgcgaagtcattcctga
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