Salvia hispanica (chia): 125192300
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Entry
125192300 CDS
T09851
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125192300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125192300
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125192300
Spliceosome [BR:
shis03041
]
Complex C
Other components
Step II factors
125192300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Sigma54_activ_2
AAA_16
nSTAND3
ABC_tran
TsaE
Flavi_DEAD
PhoH
T2SSE
GIPC1_GH2
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
125192300
NCBI-ProteinID:
XP_047945794
LinkDB
All DBs
Position
6:complement(1488561..1493599)
Genome browser
AA seq
1204 aa
AA seq
DB search
MVAEIEGDGLKKLEYLSLVSKVCTELETHLGFGDKVLAEFITEMGRNCETVDEFDVKLKE
NGAEMPDYFVRTLLTIIHAILPPKQKSKSDKGSKEGGDEPFTALKIKDGRERVKELEKEI
EEEAKGRRRLEGNDEEDRYRNRERDGDRRERRHDRDRDRDRERGRHGDREDRGRHGDREE
RGRHKGREERVVDGDRDGYGDERGRQRNGGRDRNRGGERNWRNEYDEERDDENREVRKGR
DSHSDEPELYKVYKGRVSRVMDKGCFVQFHDFKGKEGLVHVSQLATRRISNAKDVVKRDQ
EVYVKVISVSGSNLSLSMRDVDQNSGKDLLPLKRSEADDGMTANPSGRNDGGGMGSRIGL
SGIRITEEVDAVPSRRPLKKMSSPERWEAKQLVASGVMSVKDYPMFDDEGDGMMYQEEGG
DEELEVELNDDEPAFLQGQSRYSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQ
QRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRS
KLSIQEQRQSLPIYKLKKELVQAVHENQLLVVIGETGSGKTTQVTQYLAEAGYTTKGKIG
CTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTSPETVIKYMTDGMLLREILIDE
DLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNI
FTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDYACQCLY
ERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYV
IDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSP
TTVPEIQRINLGMTTLNLKAMGINDLLSFDFMDPPTPQALISAMEQLYSLGALDEEGLLT
KLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAK
FFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVV
SAGKNFAKIRKAIGAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHEL
VMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLS
KRRA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggtggcggaaatcgaaggcgatgggctgaagaagctagagtatttgtcgttagtttcc
aaagtgtgtacggagctggaaacgcatttaggttttggggataaagtgttggcggagttc
atcacggagatgggcaggaattgcgagacggtggacgaattcgatgtcaaattgaaggag
aatggggcggaaatgcccgattattttgtccgcacgcttctcaccattatccacgcgatt
cttccgccgaagcagaaatcgaaatcggataagggatcgaaggaggggggcgatgagccg
tttacagctttgaagatcaaagatgggagggagagggtgaaggagctggagaaggagatt
gaagaggaggctaaagggcggaggagattggaggggaatgatgaggaagataggtatagg
aatcgggagagagatggtgataggagagagaggagacatgaccgagatcgagatagagat
agggaaaggggtcgacatggggatagagaggatcgaggtaggcatggggatagggaggag
agaggtaggcataagggtagggaggagagggttgttgatggagatagggatggttatggc
gacgagagaggcaggcaaaggaacggtggccgggataggaatcgaggaggagaacggaat
tggaggaatgaatatgatgaagagagggatgatgagaacagagaagtgaggaaggggagg
gatagccattcggatgagccggaattgtacaaggtttacaaaggaagggtttcgagggtg
atggataaggggtgttttgttcagtttcatgattttaaagggaaggagggtctggtacat
gtgtctcagttggcaacacgtaggatttctaatgccaaggatgtagtgaagcgagaccaa
gaggtctacgtgaaggttatctccgttagtgggagtaatctgagtttgtcaatgagggat
gttgatcagaacagtggaaaggatttgttgcccttgaagaggagtgaggcagatgatgga
atgacggccaacccttcgggtaggaatgatggtggagggatggggagtaggattggtctg
tccggtatcaggataaccgaggaagttgatgctgtgccatcgcggagaccactgaagaag
atgagttcacccgagcgatgggaggctaagcagctagtggcttctggtgttatgagcgta
aaggattatcctatgtttgatgatgagggagatgggatgatgtatcaggaagaaggtgga
gatgaggagcttgaggttgagttgaatgatgatgaacctgctttcttgcagggtcagagt
cggtattccattgacatgtcccctgtgaagatattcaagaatcccgaggggtctttgagc
cgtgcagcagcgctccaatctgctttgataaaggagaggagagaagttagggagcaacaa
caacgaactatgcttgattccattccaaaggatctcaatcgtccttgggaagacccaatg
ccggaaactggtgagaggcatcttgctcaggaactgagaggtgttggtttgtctgcatat
gacatgcctgagtggaagaaggatgcatatggaaaagctctaacttttgggcaaagatca
aagctttccattcaggaacagagacagagtttacccatctataaattaaagaaggagctg
gttcaggctgttcatgaaaatcagctcctggttgttattggtgaaacggggtcaggaaag
acgacacaggtcacacaatatctcgctgaagcaggttacactaccaagggaaaaattgga
tgcactcagcctcgaagagtggctgcaatgtctgtggcaaagagggttgctgaggaattt
ggttgtcgtctgggtgaagaggtcgggtatgcaatccgttttgaggattgcaccagtcca
gagactgtaatcaagtacatgactgatggtatgcttctgagagagattctgattgacgaa
gacttatctcagtactcagtgataatgcttgatgaagctcacgagaggaccattcacaca
gatgtcctttttggattactgaagcagcttgtaaaacgaaggcccgaccttcgtctgatt
gtcacgtctgcaactttggacgcggagaagttctctggatatttcttcaactgtaacatt
ttcaccattccaggtagaacttttccagtagaaatactgtacaccaaacagccggaaagt
gattatctggatgcatcattgatcactgtgttacagattcatttgactgaacctgaaggt
gatatacttctgttcttgactggtcaagaagagattgattatgcttgtcaatgtctctat
gagagaatgaagggtctaggtaaaaatgttccggagctgattattttacctgtatatagt
gctctgcctagtgaaatgcagtccaggatttttgatcctgcacctccaggaaagaggaaa
gtcgttgttgcgaccaatatagccgaagcttctttgactattgacggaatattttatgtt
attgatcccgggtttgctaagcaaaacgtatacaatcctaaacaagggcttgactctttg
gtgataactccaatctcacaagcgtctgcgaaacaaagagctgggcgtgctgggcgtaca
ggaccaggaaagtgctatcgcctctatacagagagtgcattccacaatgagatgtctccc
accacagttccagagatacaaaggattaatcttggaatgactactcttaacttgaaagct
atgggtataaatgatctgttgtcttttgatttcatggacccccctacacctcaggctctc
atttctgccatggagcagctatacagtttaggagctctagatgaagagggtcttctaact
aagttgggtagaaaaatggctgaatttccgttggatcctccactgtccaaaatgcttctt
gccagtgtggatcttggttgcagtgatgagattcttaccattattgcaatgattcaaact
ggaaatatattctaccggccacgagaaaaacaggctcaagcggatcagaaaagagctaag
tttttccagccagaaggagaccatttgactctacttgctgtttatgaggcatggaaagcc
aaaaatttctcaggtccatggtgctttgagaattttgttcagtcacgatcactgaggagg
gcacaggatgtgaggaagcagcttctctccatcatggacaagtacaaactggatgttgtg
agtgctggtaagaattttgcgaagatacggaaggctataggtgctggtttctttttccat
gctgctaggaaggatccacaagaaggctacagaacgcttgttgagaaccaaccggtgtat
atacatccaagcagtgctttgttccagagacaacccgactgggttatttaccacgaattg
gtgatgaccaccaaggagtatatgcgcgaggtgactgtcatagatccaaagtggctggtt
gaacttgctccaaggttcttcaaggtgtcagatcctacgaaaatgagcaagcgcaagaga
caagagcgtattgagccactctacgacagatatcacgaaccaaactcttggcgtttaagc
aaaaggcgtgcttag
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integrated database retrieval system
