Salvia hispanica (chia): 125192435
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Entry
125192435 CDS
T09851
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03022
Basal transcription factors
shis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125192435
09124 Replication and repair
03420 Nucleotide excision repair
125192435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125192435
03400 DNA repair and recombination proteins [BR:
shis03400
]
125192435
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125192435
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125192435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
125192435
NCBI-ProteinID:
XP_047945958
LinkDB
All DBs
Position
6:complement(26402814..26410519)
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AA seq
293 aa
AA seq
DB search
MTPVSSKLYADDVSLLMVLIDTNPFFWNSAQSTLPFSKFLTHVLAFLNSILLLNQMNQVV
VIAAGYNSCGYIFDSSDPQNQNKRAEDLLHKLEEFVDNDQELCREETVDGPGFSLLSGSL
SMALCYIQRVFRTVPLHPQPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVLGAQ
HSAFLQQASYITGGVYLKPQIFDGLFQYLSTVFATDLHSRCFLQLPKPAGVDFRASCFCH
KNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQAQTQNSSTTPDRKMKTPVDG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgtctcatccaagctctacgcagatgatgtgagtctgttaatggtactaatt
gacacgaacccattcttttggaactcggctcaatccacgcttcccttctccaagttcttg
actcatgtacttgcatttttgaattctatacttctgctgaatcagatgaatcaagtggtt
gtcattgcagctggttataattcttgtggttacatatttgattcatcagacccacagaac
caaaataaacgggcagaggatttactgcataaattggaggaatttgtggacaatgatcag
gaactatgtcgtgaagagactgtggatggcccagggttctcacttctatctggttccctc
tcaatggcgctttgctatattcagagggtcttccgaacagtgccacttcatcctcagcca
cggatattatgcttacatggatctccagatggacctggacaatatgtagccatcatgaat
tcaattttctctgctcagcgatcaatggttcctattgattcatgtgtgctgggagctcaa
cactctgctttcctgcagcaggcttcttatataactggtggtgtatatctgaagccgcag
atattcgatggcctatttcagtatctttcgactgtgtttgctactgatttgcattctcgt
tgctttttacaacttcctaagcctgctggagtagactttcgtgcatcgtgtttctgccac
aaaaacacaattgatatgggctacatttgttcggtatgtttatctatattctgcaagcat
cagaagaaatgttcgacctgtggatctgtgtttggtcaggcccaaacacagaactcctcg
acaacaccggacaggaagatgaagacaccggttgacggttag
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integrated database retrieval system
