Salvia hispanica (chia): 125192599
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Entry
125192599 CDS
T09851
Name
(RefSeq) THO complex subunit 6-like isoform X1
KO
K13175
THO complex subunit 6
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125192599
09122 Translation
03013 Nucleocytoplasmic transport
125192599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125192599
03041 Spliceosome [BR:
shis03041
]
125192599
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125192599
Spliceosome [BR:
shis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125192599
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR41
EIF3I
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Ge1_WD40
CFAP251_N
DSE1_N
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_Nup120_160
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
125192599
NCBI-ProteinID:
XP_047946180
LinkDB
All DBs
Position
6:complement(29985944..29996210)
Genome browser
AA seq
372 aa
AA seq
DB search
MGLGVEHQIHMDCRNWEEDFYRDAILQERETLSRTVFRTAYAPNPNPNPNSDHLVAASSD
GSIAAYSISACLEMGCGSSRNQNWLAAEPEFVIRGHDGPAYDVKFYDDSLLLSCGDDGRI
RGWKWKEILESEESEQGAKMKPVLDLVNPQHKGPWGARSPIPENNAIAVNSQSGSIYAAA
GDSCAYCWDMEKSQVKMVFKGHLNYLHCIVSCESSSQIITGSEDGTARIWDCKSGKCIQV
INPEKEGTGASFPCVSCIALDSSESWMVCGKGQSLSLWNLPARECVSVARTQASVQDALF
DENHILAVGAEPLLTRINMNGDIISQIQCAPTSAFSVSLHPSGVAAVSGYGALVDMISQF
GSHLCTFRCRGL
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgggattgggagtagaacaccaaatccatatggattgcagaaactgggaggaagatttt
tacagagacgccattttgcaagagagagagactctttctcgcaccgttttccggaccgca
tacgctccaaaccctaatcccaatcccaattctgaccatctcgtcgccgcctctagcgat
ggctcaatcgccgcgtactccatttccgcctgcctcgagatgggctgcggaagctccagg
aatcaaaattggttagctgcggagccagagtttgtgattcgagggcacgatggaccagct
tatgatgttaaattttacgatgattctttgttgctgagttgtggtgatgatggtcgaatt
cgaggctggaaatggaaagaaattttagaaagcgaggaatctgagcaaggagccaagatg
aagccagtacttgacttggtgaatcctcaacataaaggtccttggggtgctcgttctcct
attccggaaaataatgccattgcagtgaactctcagagtggatctatatatgcagctgct
ggtgattcttgtgcatattgttgggatatggagaagtcccaggtcaagatggtttttaaa
gggcatttgaactatctacattgcattgtttcgtgcgagtcgagtagtcagattattact
ggttcagaagatggcacagcacgcatatgggattgcaaaagtgggaagtgtatacaagta
atcaatccagaaaaagaagggacaggggcttcttttccatgtgtcagctgtattgctctt
gattctagtgagagttggatggtttgtggaaagggccagtctttatcactttggaatctt
cctgcccgtgaatgcgtttctgttgctagaactcaggcttctgtccaagatgctctattt
gatgagaatcatattctagctgttggtgcagaaccattactcacacgaataaacatgaat
ggggacattatttcccagatccagtgtgctccaacatccgcattttccgtttctttgcac
ccttcaggggtagcagcagtatctggctatggagcgcttgtcgacatgatctcacaattc
gggagccacttgtgtacatttcgctgtaggggcctataa
DBGET
integrated database retrieval system
