Salvia hispanica (chia): 125193138
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Entry
125193138 CDS
T09851
Name
(RefSeq) nuclear pore complex protein NUP160 isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125193138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125193138
03036 Chromosome and associated proteins [BR:
shis03036
]
125193138
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125193138
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125193138
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
Nucleoporin_N
NUP160_helical
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
125193138
NCBI-ProteinID:
XP_047946838
LinkDB
All DBs
Position
6:29325772..29341245
Genome browser
AA seq
1500 aa
AA seq
DB search
MATSNHWRMAGMEVPLLSTDSIEWRQLSVPSTSTYTPNNDNSIAKDFASSCAVGNPPSYF
IWKTSRSKAHVLEILQLKDTPTIGLRLVFPDSLFPFAFICKSRETNVASGDCLVLYALTI
SGVAYAIRLKSNFDYGTSSFVPASEVLEYNIHVQPHSGTITAVAASEGCLLIGRSDGSIS
CFQLGILDPSTPGFVSELRDDAGFGRLWGILSRSPNLAAVVDLVVSEVNQRKLLFVLHSD
GSFRVWDLLSRSKLFSHAMPVPASTGAFVRLWVGEANIVTWVIPLAMLHGQNLEVATETI
YLYGLRLNVGERARLSLEPSSRRISLGEVGPIDVKLTSDKVWILKEDGFIMQELHSNDST
EGLAHCYALQENLVADLLFQSSKHSSDDLLWLAYSAFSSAEEEIAPFLSSVFFHALLSPG
VHCNAVIRQTLVDYQKHFTDSEFGSFTVEGLKSEILSLIEHQGGSDSPVSILQFWKAFCA
RYVNNWCKYNAAYGLVMDPSTGAFVIVRNYTISLCRGLEDVEHIIYDSFENQKKYIGCEL
DDLGDELERNILFEFLQCVQNVSQQLGKASSTIFCESLLRTPHISFEEVVTRLLKILETG
YSSSTAAILIPELGGDAALEKELSNHRNLRKFSTNMFLSFHELCHKANSWKKVLDVVESY
LKFLVPHKIVLKSDEAGPFHINGSAIVHSTSQIAKVMFDSGLDICMLLSYMTSISGQLKM
SYDDVSRIKVELIPMIQEITTEWHIIHYLGTTPCESHSPAIEDFSHKLSSLQIDCSGDKR
LWNAKLGNFEFSLAHILLLSMQGSSGEFGKLFFSQLPNPISLVTLSRGLISWIIWGRSGK
ESSVFFSNSTELALILLMNNQYSATEYLLTLVDAYSRKEKSFGSLQAMDGKLALLSHLLG
CCLVVQTQYGLHGPVKDRKIAEALPCFFRAASIERSSEAIQSLPPEAGWFKVDFSSSPST
AAWKLHYYQWVMQLFEQYNLSEAACQFALAALEQVDESLGTEGSTYNGNLGESVTTVKGR
LWANVFKLTLDLNNYHDAYCAIISNPDEESKIICLRRFVIVLYERGAIKILCNGQLPLIG
LVEKVERELAWKAARSDISAKPNPFKLLYAFEVHRHNWRRAASYIYRYSVRLRADAAVKD
HQLRSFTLQERVNGLAAAINALQLVHPSYAWIDAPVDDISYDKEIYPNKKARITMPEQSL
TGDSLPQKLPSYLDIEKLEKEFVLASAEYLLSLANIKWSFTGTDKSSADLIDLLVESSSY
DMAFTVILKFWKGSGLKRELERVFITMALKCCPSRLGASLPGKDRKQYGLLLTSSEDEPV
HDSLDAAAASQQFVGSSHWGTLEHYLDKYRASHPRLPLIVAGTLLSADSQIDLPLWLVRH
FKGDRSESGFGMAGNESNPASLFRLYVDHGRHTEATNLLIEYMENLASIRPADIIHRKKP
FAVWFPYTYVERLWGMLEESIQMGHRSDQCEKLKKLLHGALSSHLNLLKVESDDVKSCSS
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccagtaaccactggcgaatggccggtatggaggtcccgctgctcagcactgac
tcaatcgaatggcgtcaactctccgttccttccacatctacatatacgcccaacaacgac
aactctattgccaaagacttcgcctcttcctgcgccgttggaaatcctccttcctatttc
atctggaaaaccagtaggagtaaggcacacgtgctggagattctacaacttaaagataca
ccaactatagggctgcgccttgtatttcctgattctctttttccgtttgctttcatctgc
aaatcacgcgagaccaatgttgcttctggagattgtttggtgctctatgctttgacgatc
tcaggagttgcttacgccatcagattgaagagcaattttgactatggaacttcttctttt
gtccccgctagtgaggttctcgaatataatatacacgtccaacctcatagcgggacaata
accgctgttgcagcatcagaaggatgcttgctcatcggaaggagtgatggatctattagc
tgctttcagcttggcatacttgatcccagtactccaggctttgtgtctgaattgcgagac
gatgctggatttggtcggttgtggggcatattgtcaaggagccctaacttggctgctgta
gtggatttagtggtttcagaggtaaaccagagaaagcttctctttgtgcttcattccgat
ggtagttttcgggtatgggaccttcttagccgcagtaaacttttcagtcatgccatgcca
gttccagcaagtacaggtgcatttgttaggttgtgggtgggcgaagcgaatatagtcaca
tgggtaatccctttggcaatgcttcacggacaaaatttggaagttgcaacagaaacaatc
tatctatatggacttcgtcttaatgtgggagaaagggcacgattgtcattggagccttca
tcaagaagaatctccttaggagaggttggaccaattgatgttaaacttacttcggacaaa
gtgtggattctcaaggaagatggcttcataatgcaagaattacatagtaatgactccacc
gaggggttagcccattgctatgcattgcaagaaaatttggttgctgacctgctatttcag
agttctaaacattcttcagatgatcttctttggctggcctattcagcattttcttcagca
gaggaggaaatcgcaccatttctatcttctgtgtttttccatgcattgctttctcctggg
gttcattgcaatgctgttatcagacaaactttagtagattaccagaagcacttcactgat
tctgagtttggttcattcactgttgaaggtctgaagagtgagattttgtcattgatcgaa
catcagggtggaagtgacagtccagtttccattcttcaattttggaaagctttctgtgcc
cgctatgtaaataattggtgtaaatacaatgcagcatatggtttggtcatggatccatcc
acaggtgcttttgttatagttaggaactatacaatctctctatgccgtggcttggaggat
gtggagcatatcatatatgattcttttgagaaccagaaaaagtatataggctgtgagctg
gatgatttgggtgatgagttggaaagaaatattctctttgagtttctacaatgtgttcaa
aatgtgagccagcagttgggaaaagcgtcatcaactattttttgtgaatcacttcttaga
acacctcatatatctttcgaggaggttgttacccgtcttctaaagattctagaaactgga
tacagctcttcaactgcagcaattctaataccagaacttggaggtgatgctgccctggaa
aaagaattgtcaaatcacagaaacctaagaaaattctccacaaatatgtttttgtccttt
catgaattgtgccataaagctaactcatggaaaaaggttttagacgtggttgagagctac
ttaaagtttttagtgcctcataaaattgtacttaaatcggatgaagctggaccattccat
ataaatggttctgcaatagtgcactccacgtcccaaatcgctaaagtgatgtttgattcc
gggttggatatttgtatgctgctaagctatatgactagcatcagtgggcagcttaaaatg
tcatatgatgacgtttcacggattaaagtagagttaataccaatgattcaagaaattacg
acagaatggcatattatccattacttgggtaccacaccatgtgaatcacattcaccggca
attgaagatttcagtcataaactttcatccttacaaattgattgcagtggggataaaaga
ttgtggaatgcgaagcttgggaattttgaattttcattggcacatatcctactattgagc
atgcaaggttcctccggagaatttggaaagctctttttcagtcaacttccaaatcctatc
agcttggttactttaagtagggggcttatcagctggataatttggggaagaagtggcaaa
gaatcttctgtatttttcagcaattcaactgaacttgcactgatattacttatgaacaat
cagtatagtgctactgagtatttactcactttggtggatgcgtattcacgcaaggagaaa
agttttggaagtcttcaagctatggatggcaaattggctttgctgtcccatcttcttgga
tgttgtctagttgttcagacacaatatggactgcatggaccagttaaggatagaaaaatt
gcagaagcgcttccctgctttttcagagctgcatcaatagaaagatcttcagaggctata
caaagtctgccacctgaagcaggatggttcaaagttgatttcagcagttccccctcaact
gcagcatggaagcttcactattatcaatgggtgatgcagctctttgaacaatataatttg
agtgaagctgcttgccaatttgctctggccgcacttgagcaagttgatgaatctcttggc
actgagggtagcacctataatgggaaccttggtgaatcagtgactactgtaaaggggaga
ctttgggctaatgtttttaaattgacgttggatctcaataactaccatgatgcatattgt
gctataatttcaaatccagatgaggaaagcaagatcatctgtttgaggcgtttcgttata
gttctttatgagcgtggtgctataaagatactgtgtaatggccagttgccactgattggt
ttagtggagaaagtagagcgagagcttgcctggaaggcagcgcgttctgatatctcagca
aagccaaaccctttcaaattactttatgcatttgaggtgcataggcataactggcgaaga
gccgcaagttacatttaccgttattctgtgcgtttgagagccgatgcagcagtaaaagat
catcaactaaggtcttttactctgcaagagagggtgaatgggcttgctgctgctatcaac
gccctccaacttgttcatccatcatatgcttggattgatgcccctgtggatgacatctct
tatgataaagaaatctatcctaataaaaaggctagaataaccatgccagaacaatctctc
actggtgattctcttcctcaaaagcttccatcttatttggatattgagaaacttgaaaag
gagtttgtcctagcatcggcagaatacctgctttctttggcaaacatcaagtggagcttt
actggaactgataaatcatcggctgaccttattgatcttttggttgaatcaagctcatat
gacatggcgtttacggtgatcctcaaattctggaagggttctggtcttaaaagggaactt
gaaagggtatttatcacaatggcactgaaatgctgcccaagcaggctaggcgcctcattg
cctggtaaagatcgtaaacaatatggtttgctgttgacttcatcagaagatgagcctgta
catgactcgcttgatgcagctgcggcatcacaacaatttgtcggaagtagccactgggga
acactggaacactatcttgataagtacagggcatctcatcccagattgccattaattgtt
gctggaactctactttcagctgattcccaaattgacttaccactatggctggtccgacat
tttaagggtgatcgtagtgaaagtggttttggcatggctggaaatgaatcaaatccagca
tccctatttcgcctgtatgttgatcacggaagacatacagaggctaccaatttgctgatt
gaatacatggaaaacttggcatctattcgaccagctgatattatccatcgtaaaaagcct
tttgctgtttggtttccatatacttatgtggaacgcctatggggcatgttggaggagtca
atacaaatgggccacagaagcgaccagtgtgaaaagctgaaaaaattattacatggggct
ttatcaagccatctaaatctcctgaaagtggagtcggatgatgttaaatcttgttcaagc
tag
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integrated database retrieval system
