Salvia hispanica (chia): 125193460
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Entry
125193460 CDS
T09851
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125193460
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
shis01002
]
125193460
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125193460
03036 Chromosome and associated proteins [BR:
shis03036
]
125193460
03400 DNA repair and recombination proteins [BR:
shis03400
]
125193460
Peptidases and inhibitors [BR:
shis01002
]
Metallo peptidases
Family M67
125193460
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125193460
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
125193460
BRISC complex
125193460
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
125193460
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
125193460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
125193460
NCBI-ProteinID:
XP_047947205
LinkDB
All DBs
Position
6:complement(12200847..12205976)
Genome browser
AA seq
427 aa
AA seq
DB search
MSLTSVKMSEDVWLTCLTHALSTETEEIMGLLLGDIQSTKNGVTALIWEALPQPRSDRQK
DRVETNPEQLTAASVHAERMTMATGTTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDP
GFIGLIFSCFSEDAQKVGRIQVIAFQSMDGKQGHMMQPLSLTPVQKSSVIDLESSMSSSD
NANAVFGSSKGETMEQDTGDSEAAGRVSKGSGKSPRLGGFLANATANTGNNSHANSLNDA
INGLDPMDMTEGMQEAMHLSTLEMSGAEYIRKEIPLHVLPTSSLLSIDSPSSSFTYLQRV
LYEEEKTAYNQAMAQNTRDGKVHPLSFIHHTATYKSSMCKMIEYCLSPAMTVLQDRLREN
EIQLNLLAEEANLLESEVSRGSPSNSSPRSPSQGYRSSTSGHRDLYPTDLSQVKNVGGSR
SRRGSQS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaacgagcgtgaagatgtcggaggatgtgtggttgacgtgtctgacccatgca
ttgtccactgagactgaggagatcatgggccttcttcttggtgatattcagagcacaaag
aatggtgtaactgcattgatctgggaagcacttccacaaccacgttctgatcgacagaag
gatagagttgagactaacccagagcagctgactgctgcatcagttcatgctgagagaatg
acaatggcaacgggaactacaacaagagtgattggctggtatcactcgcatcctcatatc
acagtcctaccatctcatgttgatgtgcggactcaagcaatgtatcagctattggatcct
gggtttattggtttgattttttcctgtttcagtgaagatgctcaaaaggtcggaaggatt
caagtcattgcatttcagtctatggatgggaagcagggtcacatgatgcaacctctttct
ctcactcccgttcaaaaaagttctgttatagatttagagtcttccatgagttcttcagac
aatgcaaatgctgtgtttggctcttccaaaggagaaactatggaacaagacactggagat
tcggaggcagctggtagggtttcgaagggctcggggaaatcaccacgtttgggaggtttt
ttggctaatgctactgctaatacaggaaacaatagtcatgctaacagtttgaatgatgcg
attaatggtttggatcccatggatatgactgaaggtatgcaagaagcgatgcatttgtca
actttggagatgagtggtgcagaatatatcagaaaggaaattcctcttcatgttctccct
acatcatcccttctgagtatcgattctccttcgtcatcctttacatatctccaacgggta
ctgtatgaagaagagaagactgcatataatcaagcgatggcacaaaacacgagggacggc
aaagttcaccccctctctttcattcatcacacagccacatacaagtcttccatgtgcaaa
atgattgagtactgcttgagtcctgccatgactgttcttcaagatcgcttgagagaaaat
gaaattcagttaaatctgctcgcggaagaagccaatctactggaatcagaggtctcaaga
ggaagcccctcaaattcgtctcctcgctctccatctcaggggtatcggagtagtacctcc
ggtcacagggacctgtatccgacggacttgagccaggtgaaaaatgtgggtggtagccgg
agccgaagagggtcccagtcgtga
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