Salvia hispanica (chia): 125193807
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Entry
125193807 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125193807 isoform X1
KO
K06100
symplekin
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125193807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125193807
03019 Messenger RNA biogenesis [BR:
shis03019
]
125193807
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125193807
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125193807
U7-dependent histone pre-mRNA processing factors
125193807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
125193807
NCBI-ProteinID:
XP_047947655
LinkDB
All DBs
Position
6:complement(14677559..14696086)
Genome browser
AA seq
1329 aa
AA seq
DB search
MASALARDQALSLLAAANNHGDLAVKLSSLKQAKDILFSVEPSQAAELFPYLAELQSSPE
PLVRKYLLEVIDEARAKESEHLVILFPVLLTFLKDNNPIVATQSIITGTKIFSSVLEELA
LQFQRRGIVQRWLEELWTGLIKFRDAVLGIIFEAGPIGPKLLAIKFIETFILCFTLDSTE
FDMCNPEVIARQGRMFNVSWIADSHPILNPHVLMSDANRHLEILLEMLLSASKFPGCVTI
TAVNSLVAIARKRPVYYKTVLKALLDFSPSMEMAKGCHTVSIQYSLRTAFLGFLRCTHPI
MIESREKLLKELRAMNAGDAAEQVIRQMDKIMRNNERASRDLQFNKDDQLSSQLHISGEL
TKKRTAQLDNENQNNIFEASSKKSRHGPHNNKTTTASDAGQNHVNGISAKPPVLDGDLTP
VEQMVAMIGALIAEGERGVESLEILISNIHADLLADIVITNMKHLPKNPPPLTRYGNLSL
NHPSDTSDPAQVVGSNGFATSTQSLDHLAQLPASSLSPTSVADSDTFATANLSTDSKRDP
RRDPRRLDPRRLLAATDMPQTYVMEENVGTVQHPTVEPDFNPVSSSSVLLSVPQSVPECA
PQPLPTIETDINLPDSPMTIEVDESIQKYEVHDFDANVITPDKDATNYLHLSPSTGKEDI
VSQPSMGVAMFDEAYSPSSEASDELPPDIPNVEESESASAELPVLPLYIELDEDHQIHAR
RLALERIINKYQNSQRTDIKQTQIALVARLFAQIDVSDVIEMAQKLIISDYEQQKGHELV
LHILYHLHSLVISDSASSAAAVYENFLLGVAKSLLVDLPASNKSFSRLLGEVPHIPDSVL
GMLDDMCTKSHSGTDGRDSDRVTQGLGVVWSLILSRPFIRQACLDIALKCTVHPKDDIQA
KAIRLVSNKLYAVSYISNSIEQFAKNMFLSAVDQHSSDALLSESANSDRRIGGQVESAET
STSASQVSEPGISPDETMKGVQDASLDDSSNIFSQAHRLMSLFFALCAKKPALLQLVFDS
YTRSSKAVKQAVHRHITVLMRALGSSYSDLLHIISNPPQGSEDLLTQVLHLLSEGRAPPT
DLVVTVKHLYETRLKDATILIPILSAFSRDEVLPIFPRLVQLPLPKFQMALAHILQGSAH
TGPALTPVEVLVAIHDISPERDCLPLKKITDTCSACFEQRTVFTQQVLAKALNQMVDRTP
LPLLFMRTVIQAIDAFPSLVDFVMDILSKLVNRQVWRMPKQWVGFLKCISQTQPHSFKVL
LQLPSPQLESALSKYPNLRGPLAACTNQSSIKTSVPRTTLVLLGLASETQMQQPHSVSSL
HASDGPTST
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgccctggccagggaccaggcgctctccctgctcgccgcggcgaacaaccat
ggagatttggccgtcaagttatcgtcattgaagcaggccaaagacatattgttttctgta
gagccgtcgcaggccgcggagcttttcccctacttggctgagctccagtcttcccccgaa
ccgctagtcaggaaatatctccttgaggtaattgatgaagcccgggccaaagaaagtgaa
catcttgtcatattatttcctgtcttattgacatttttgaaagataataatccaattgtt
gcaacacaatctattatcactggcacaaaaattttctccagcgtgctggaagagctggca
ttgcagtttcaacggcgtggtatagttcaaagatggcttgaagaactttggacaggcttg
atcaaatttagggatgctgttttaggcattatctttgaggcggggcctattggtcctaag
ttgttagcgataaagtttattgaaacatttattttatgcttcacattggattcaactgag
tttgatatgtgcaaccctgaagtgatagcgaggcaaggaaggatgtttaatgtctcatgg
atagcggatagtcatcctattctgaatcctcacgtgctcatgtcagatgcaaatagacat
ctagagatcttattagaaatgttgctgtcagcaagtaaatttcctggttgcgtgacaatt
actgctgtcaatagtcttgtagctattgcaaggaaaaggcctgtctactacaaaactgta
ttgaaggcactgctcgactttagtccaagtatggagatggccaaaggctgccatacagtc
agcattcaatattctctaagaactgcatttttaggatttctaaggtgtacacatcctatc
atgatcgagtcgagagagaaactgcttaaagagttgcgagcaatgaatgctggagatgct
gctgagcaggttatccgacaaatggataaaatcatgagaaacaatgagcgtgcttcacgt
gatctccagttcaataaggatgatcagctgtcaagtcagttgcatatttcaggggagttg
acaaagaaaaggacagctcaattggacaatgaaaatcagaataatatctttgaagcctct
tctaagaagtcacgtcacggtccccataacaataaaactaccactgctagtgatgcaggg
cagaatcatgttaatggaatatctgctaagccccctgtgttggatggggatctgactcca
gtggagcagatggttgctatgattggcgctttaattgccgaaggagaaagaggagtcgag
tctctggagattctaatatcaaatattcatgccgatttacttgctgatattgtcatcacc
aatatgaagcacttgccaaagaatccacctcctttgacaagatacggtaacttatctttg
aatcatcctagtgacactagtgatcctgcccaagtagttggatcaaatggttttgcaact
tctacgcaaagtttggaccatttggctcagttacctgcttcatcattgagcccgactagt
gttgcagattcagatacatttgctactgctaatctatctacagattctaaacgtgatcca
cgaagggatcctcggcgccttgatccaaggcgcttgttggctgctacggatatgccccaa
acgtatgttatggaagaaaatgttggtactgtccaacatccgactgtagagcctgatttc
aatcctgtcagctcctccagtgtactcttatcagtacctcaatctgtacctgaatgtgct
cctcagcctctgcccacaattgaaactgacataaatcttccagactcgccaatgacaatc
gaagttgatgagtctatccagaaatatgaagtccatgattttgatgccaatgtaatcact
ccagataaggatgcaaccaattatttacatctttcaccatctactggcaaagaggacatt
gtttctcagccatcaatgggtgtagccatgtttgacgaggcctactccccttcatcagaa
gcatctgatgaactaccgccagatattccaaatgtcgaagaatctgagagtgcatctgct
gagttgccagtgcttcccttgtatattgagcttgatgaagatcatcaaatacatgcaaga
agactggcacttgaacggataattaataagtaccagaattcacagagaacagatattaaa
caaacacaaattgcacttgtcgcccgactgttcgcacagattgacgttagtgatgtgatt
gagatggcacagaaactcataatatcagattatgaacagcaaaagggtcacgagcttgtg
ttgcatatcctataccatctccatagtcttgtgatctcagactctgcatcatctgctgct
gctgtatatgagaatttccttttgggagtggcaaaatctttgctagtggatttaccagca
tctaacaaatcttttagtcgacttcttggtgaagttccacacatacctgattctgtactg
gggatgttggatgacatgtgtaccaaaagtcattctggaaccgatggtcgtgatagtgat
cgtgtcactcagggccttggtgtagtgtggagcttaattcttagtcgtcctttcattcgt
caagcatgtctcgatatagctttgaagtgtactgtgcacccaaaggatgatatccaggct
aaagctatacgcctggtgtcaaacaaactatatgcagtcagctatatttctaacagcatt
gagcaatttgcaaaaaacatgttcttgtctgctgtagatcagcattcttcagatgcattg
ctatcagagtctgcaaattctgacagaagaattggaggacaggtagaaagtgcagaaaca
tccactagtgcttctcaagtttctgagcctgggatttctccagatgagactatgaaagga
gtccaggatgcatccctggatgattcatcaaatatattttctcaagctcacaggctcatg
tccttattttttgcactctgtgctaagaaaccagctcttcttcaacttgtttttgacagt
tacacccgttcttcgaaggctgttaagcaggctgtccatcgtcatataactgttctgatg
agggctctagggtcatcgtattcagatttacttcatataatctcaaatcctcctcaagga
agtgaagatttgttgacacaggttcttcatttgttgtctgaagggcgagcaccacctaca
gatttggtggtgactgttaaacatttatacgaaactaggctaaaggatgctactattctt
attcctatcctatcagccttctctagagatgaggttttacctattttccctcggcttgtc
cagcttcctttgcctaagtttcaaatggcattggctcatatattacagggttctgctcat
acaggtcctgcattaacgcctgtcgaagtcttggtagcaatccatgacatttctcctgag
agagattgtcttccactgaaaaagatcacagatacttgctcagcttgctttgagcagcgc
acagtttttacacaacaagtcctggcaaaggccttaaaccagatggttgaccgaactcca
cttcccctgctcttcatgagaactgtaattcaagcaatagatgcttttccgtcactggtt
gattttgtcatggatattctttctaaacttgttaacaggcaggtttggagaatgccaaaa
caatgggttggcttcttgaaatgtatctctcaaacacagccacattccttcaaagtattg
ctccagctgccgtctcctcagcttgaaagcgctctaagcaagtatccgaatcttcgtgga
cctcttgctgcatgtacaaaccaatcaagtattaaaacctctgtgcctaggacaacccta
gtgcttcttggccttgcatctgaaacacaaatgcagcaaccgcactctgtttcgtctctg
catgcctccgatggcccaacatctacgtga
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