Salvia hispanica (chia): 125193882
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Entry
125193882 CDS
T09851
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125193882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125193882
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125193882
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_14
Succ_CoA_lig
DUF7674
Motif
Other DBs
NCBI-GeneID:
125193882
NCBI-ProteinID:
XP_047947773
LinkDB
All DBs
Position
6:3004723..3011426
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AA seq
844 aa
AA seq
DB search
MDSPSASVVLNTRDGSPSAAVGEDDGALFAEGLAKEAAVLFQSGKFADCLKILNQLLQKK
ENDPKVCHNVAIVESLQDGCSDPRRLIKALEKIKEQSEELACASGEQEVSSNNGSEHTSS
IRGNNTPRHPISSIVYNDGLDTSVATFNIAVIWYHLHEYARSFSYLDTLYQTIEPIDEGT
ALRICLLLLDVALLSHNASRSSDVISYIERIFFVSSPGNQADNGSSAHQQPLLVSKSTSL
PNNLTLHDGSHHDSTPDDSLTRTLSEEALEDEPLPVLSSLDISGQNLQRPGIVSANDLQR
IQPEGSISTADLRLKLHLYKVRFLLLTRNLKAAKREVKMAMNLARGKDYPLALYLKSQLE
YARGNHRKAIKLLMASSNSIEMGISSMYYNDLGCIYYRLGKHHTSGVLFSKALSNSSAVR
KEKPPNLLTLSQDKSLLITYNCGIQSLACGRPFHAARCFQMASLIFYNRPLLWLRIAECC
LMALDKGLIKSSSASAISEVGVNVIGKGKWRQLALRYGPSNGHGTYVGMNSSVKGDGKQP
DLSMALAWQSLVNALFLLDYSEVFKADKAPVSEEKESGEAPLSQSSNLKNATGGDPKAAT
GSSQAIANGEAKEHKGGQNLSGTLANSILDYEHIRMKENLMIRQAVLADLAYVELALGDP
LKALSTARSLLELPDCSKMYIFLGTIYAAEALCLLNRPNEAAEHLLVYMPDGNNVKLPYS
QEDCENWTVEKVSDTEESNGGTTPVVTPLSTADESLAPVFSSPEEARGLFCANFAANFAL
LGDFEQAQRFLTMAFSDIPNSPQAILTAIYVDIKRGNTHDALVKLRQHSGVRFVPGNLTL
NGSC
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggattccccctcagcgtcagtggtattgaatactagggacggatcgccgtccgcggcg
gtgggtgaggacgacggtgctctgttcgcggagggtcttgctaaggaggctgctgtgctt
tttcagagtggaaagttcgcggattgtttgaaaattttgaatcagctattgcagaagaag
gaaaatgatccgaaggtgtgtcataatgttgccattgtggagagcttacaagatggatgc
tcagatcctagaaggcttatcaaagcactcgaaaagatcaaggaacaaagtgaagaactt
gcttgtgcatctggagaacaagaggtttccagcaacaatggaagtgaacacacttccagc
attagaggaaataatactccccggcatcctatttcgtcaattgtgtacaatgatggatta
gatacctcagtggcaactttcaacatagcagtcatctggtaccatcttcatgaatacgca
agatcgttctcatatttggacactttgtatcagaccattgaacctattgacgaggggaca
gctctccgtatatgtcttttactgcttgacgtcgcgttactttctcataatgcatcaaga
tcttccgatgtgataagctacatagaaaggattttttttgtcagtagtccgggcaatcaa
gcagataatggatcctcggcacaccagcaacctctattagtttcaaaatctacgtcactt
cccaacaatttgacccttcatgatggttctcaccatgattctactccagatgattcctta
accagaacattatcagaggaagcacttgaagatgaacctttgcctgtactatcctctctt
gacataagtggacagaatcttcaaagacctggcattgtctctgctaatgatcttcaaaga
atccaaccagagggttcaatatcaactgctgatttaaggcttaagttacacctttacaag
gttcgctttctgctcctgaccaggaacctgaaagcagccaagcgcgaggtgaagatggct
atgaatctggctcgtggcaaagattatcccctggctctctacctaaagtcacagcttgaa
tatgctcgtggaaatcaccggaaagcaatcaagctgttgatggcatcaagtaacagcatc
gagatgggaatctctagcatgtactacaatgatctcggctgcatctactaccggctgggt
aagcatcatacatcaggagtacttttttccaaagccttaagtaatagctcagctgtgcgg
aaggagaagcctccaaatcttctcactttgtctcaggataaatccctcctgattacgtat
aattgtggtattcaatcattggcctgtggcagaccctttcatgcagctcgttgttttcaa
atggcaagccttatcttctataacagacctcttctgtggctaagaattgctgagtgctgt
ttgatggccctagacaagggactgataaagtcttcctctgcatctgcgatttctgaggtt
ggagtcaatgtcattggcaaggggaaatggcgacaacttgctctaagatacggtccatcc
aatggccatggaacatatgttggaatgaacagttcagttaaaggtgatggcaaacagcct
gatctctcgatggctcttgcctggcagtctcttgtcaatgctttgttcttattagattat
tcggaagtattcaaggctgataaggctcctgtttctgaggaaaaagagtcgggagaggca
cctttatcgcagagttcaaatctcaagaatgccactggcggtgatcccaaagcagctact
ggctcaagtcaagctattgccaatggtgaagcgaaagagcacaagggtggacaaaatctg
tctggcacattggccaactccatccttgattacgaacatattcgcatgaaggagaacctg
atgataagacaagctgtgctggctgatttagcatatgtagagctggcactaggagatcct
ttgaaagccctttcaacagcaagatctttactagaacttcctgactgctcaaagatgtac
atattcttaggcaccatatacgctgcagaggctttatgcctgttaaataggccaaatgaa
gctgctgagcatttgctggtgtacatgcctgacggtaacaatgtcaagcttccatatagc
caagaggactgtgagaactggacagtggaaaaagtgtccgacactgaagagtcaaatggt
ggcacaacacccgttgttactcctctctcaacggcagatgaatccctagccccggtgttt
tccagccctgaggaagctcggggactgttttgtgcaaattttgctgccaattttgcgctg
ctgggagactttgagcaggctcaacgatttctaaccatggcattttctgatataccaaat
agtccccaagctattcttactgcaatttatgttgatataaagcgcggtaacactcatgat
gctcttgtcaagttgagacagcacagtggagttagatttgttcctgggaatctgacgttg
aacggaagctgttga
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