Salvia hispanica (chia): 125193923
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Entry
125193923 CDS
T09851
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125193923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125193923
03041 Spliceosome [BR:
shis03041
]
125193923
03009 Ribosome biogenesis [BR:
shis03009
]
125193923
03016 Transfer RNA biogenesis [BR:
shis03016
]
125193923
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125193923
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125193923
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125193923
Complex C
U4/U6.U5 tri-SnRNP related factors
125193923
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Helicases
125193923
Transfer RNA biogenesis [BR:
shis03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125193923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125193923
NCBI-ProteinID:
XP_047947821
LinkDB
All DBs
Position
6:2681294..2690303
Genome browser
AA seq
996 aa
AA seq
DB search
MEGSPTSMKRKQPEEGSQEQQESQVQESVSKRRSLSRTCVHEVAVPSGYVSTKDESTHGT
LADPIYNGERAKTYPFKLDPFQEVSISCLERNESVLVSAHTSAGKTAVAEYAIAMAFKEK
QRVVYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRAMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEETIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQ
PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFKEGNFLKLQETFSTQNSVDGSKSA
NSKGNGRIAKSGNASSGSNIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTP
EEKDVVGEVFRNAILCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTNVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGI
CIIMIDDKMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQF
QHEKALPDIGKKVSQLEQEAAVLDASGEAEVAEYHRLKLELAEHEKKMMAVITQPERVLS
FLLPGRLVKVREGGTDWGWGVVVNVVKKPHAVSSSMPAELASSRGNNYIVDVLLHCSIST
SENGSQPKPCPPRPGEEGEMHVVPVQLPLLSALSTLRISVPSDIRPKESRHTVLLAVQQL
EKRYPQGFPKLNPVKDMGVEEPEFVELASQIDELEHKLLIHPLHKSQDVHQISSFQRKAE
VSHEIQQLKSKMRDSQLQKFRDELKNRSRVLKRLGHIDDDGVVQLKGRAACRIDTGDELL
VTELMFNGTFNDLDHHQVAALASCFIPGDKSSEQIHLRAELAKPLQQLQDSARRIAEIQR
ECKLEINVDEYVEASIRPFLMDVIYCWSKGASFADVIQMTDIFEGSIIRLARRLDEFLNQ
LKGAAHAVGEAGLEEKFTAASEGIRRGIMFANSLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttctcctacatccatgaaaaggaaacaaccagaagagggttcgcaagaacaa
caggaaagccaggtgcaagaatctgtctcgaagaggcgtagcttatctaggacatgcgtg
cacgaggtggcagtgcccagcggatatgtttcaaccaaggatgaatcaactcatggcacc
ctggcagatcccatttataacggggagcgagctaagacctatccatttaagcttgatcct
tttcaggaggtttctatttcttgtttggagagaaatgagtctgttttagtctccgcccac
acttctgctgggaaaactgcagttgcagaatatgcaattgccatggcttttaaagagaag
cagcgggtcgtatatacttctcctctaaaagctctgagcaatcagaagtacagagagtta
agtcaagagttttcagatgttggattgatgacaggtgatgtcacactttcacctaatgca
agttgtttggtgatgactacggaaatcctgagggcaatgctttataggggttctgaggta
ttgaaggaagttgcttgggttatatttgatgagatacattacatgaaggatcgtgaaaga
ggtgtagtttgggaagaaactattatcttcttgccccccgccatcaagatggtctttctt
tctgccactatgtcaaatgcgactgagtttgctgaatggatatgtaatatacacaaacaa
ccttgtcacgtggtttacacagattttaggccgacacctctacaacactatgtgtttcct
gtgggtggctctggtttatatctcgtagttgatgagaatgagcagtttaaagaaggtaac
tttttgaagcttcaggaaactttcagtactcaaaattctgttgatgggagcaagagtgcg
aattccaaaggcaatggcagaatcgctaaaagtggaaatgcttcaagcggttccaacata
tacaaaattgtcaagatgataatggaacgaaaattccaaccagtcataatttttagtttt
agcagaagagagtgtgaacaacatgccatgtccatgtccaaacttgatttcaacactcca
gaggagaaggatgttgtgggggaagtgtttcgaaatgctatcctatgcttgagtgaggag
gatagaaatttgcctgccatagaattaatgttgccattacttcagcgaggcattgctgtt
catcattctggtttgcttcctatcattaaagaacttgtagagcttctctttcaagaaggg
cttgttaaggccctatttgccacagaaacgtttgcaatggggttgaacatgccagcaaaa
actgttgtttttacaaatgtaaaaaaatgggatggtgacagtcatcgttatatcggatct
ggtgaatatatccagatgagtggcagagctggacgtcgtggtaaagatgagcgtggtatt
tgcattataatgattgatgataagatggagatgaatacacttaaagacatggttttggga
aaaccagcacctttggtcagtactttcaggttgagttattactcaattctaaatttaatg
agtcgtgccgaaggacaattcacagctgagcatgttatcagaaactcattccatcaattt
cagcatgagaaggctttacctgacattggaaaaaaagtttcacagctcgaacaggaagct
gctgtgcttgatgcttctggagaggctgaggtggctgagtatcaccggcttaagcttgag
ttggctgaacatgaaaagaaaatgatggcagtgataacacaacctgaaagagttctctct
ttccttctacctggtagactggtcaaggtaagagaaggaggaacagattggggttgggga
gttgttgtcaatgtggtgaagaaaccgcatgccgtctcaagttctatgccagctgaactt
gcttcttcacgtggtaacaactatattgtggatgttttgcttcactgctctatcagcaca
agtgaaaatggttctcaaccaaaaccctgtcctcctcgtcctggagaagaaggtgaaatg
catgtggttcctgtacagttgcctcttctttctgcacttagcacacttagaatatcggtt
ccttctgacatacggccgaaggaaagtcggcatactgttcttcttgctgtgcaacagctt
gaaaagcgctatccacaaggctttccaaagctcaatccagtgaaggatatgggagttgaa
gagcctgaatttgttgagttggctagccaaatcgatgagcttgagcataagttgctcatt
catcccctgcacaagtcacaagacgtacatcagatttcaagtttccagagaaaagcagaa
gtcagtcatgaaattcaacagctgaagtcgaaaatgcgtgattctcagcttcaaaaattt
cgtgacgaacttaagaatcgatcgcgggttctcaaaagactgggtcatattgatgatgac
ggtgttgttcagttgaagggacgtgcagcttgccggatagacactggagatgagctcctt
gtcacagaattgatgttcaatggtaccttcaatgatcttgatcatcatcaagttgcagct
ctggctagttgctttattcctggggacaagtcaagtgaacagatacatttaagagctgaa
cttgctaaacctttgcaacaacttcaagatagtgccagaaggatagctgagatacaacgc
gagtgtaaacttgaaataaatgttgatgaatacgtcgaagcatcgattagacccttcttg
atggatgtgatttattgttggtcaaagggagcatcttttgcagatgtaattcaaatgact
gatattttcgaaggtagcatcataaggttggctagaaggcttgatgaatttttgaatcag
ttgaaaggtgctgctcatgcggttggcgaggctggtctagaggaaaaatttacagctgct
agtgaaggcattcgtcgggggataatgtttgcaaattcgttatatctttga
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