KEGG   Salvia hispanica (chia): 125193977
Entry
125193977         CDS       T09851                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
shis  Salvia hispanica (chia)
Pathway
shis03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    125193977
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shis03019]
    125193977
Messenger RNA biogenesis [BR:shis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     125193977
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     125193977
SSDB
Other DBs
NCBI-GeneID: 125193977
NCBI-ProteinID: XP_047947909
LinkDB
Position
6:complement(46778914..46783021)
AA seq 815 aa
MERSGWKDLSDFTDQSSSSFSDSARFDAAQYTFFGKGAVDEVELGGFEDEDGFASGVEGR
IGGEDDLNEYHLFDKDEGSGLGPLSEIDDLATTFAKLNKVVSGPRHPGVIGDRGSGSFSR
ESSSATEWAREADFPDWVDHHMSDSECYEENKRWSSQPHRSSLYRQESTPLYRTSSYPEQ
QQMLQHCSSEPILVPKSAFTSFPPPGSQQASPNSAHRISLSSLSGGLQLPFSSSSNSSLA
NSALHMSGLPHGYHYNPNMSRLSSPNISRHNQHQNQWSSHAGVLHGDQSILLNNIMQHQF
QNGLLPSHLLSPQQQRGQLSFQPSLAHFSALQSQIYNTYPSPAQLSKYGLAEKKEAKPKS
GKSRHSVRFSHQGSDASSSHKSEINFPQIKSKYMTAEEIESILKMQLAATHGSDPYVDDY
YHQASLAKKSAETRSRFRFCPSHQKEQSSRSRNSSEQQPHLHVDALGRVCFSSIRRPRPL
LEVDPPPSACGDGNAEQKLSEKPLEEEPMLAARITTEDGLSLLLEVDDIDRLLQFTQPQD
GGSQLKRKRHVLLEGLAASLQLVDPLGKNGNAVGLSPKDDIVFLRIVSLSKGRKLISKFL
QLLIPGSELARIVCMAIFRHLRFLFGGLPSDAEATITINDLAKRVSLCVSGMDLNSLSAC
LAAVVCSSEQPPLRPVGSPAGDGASVILKSVLERATTLLRDPQFGGNYSIPNPALWQASF
DAFFGLLTKYCVSKYDSIVQSLVVQNAPNTEAIGPEAAKAVSREMPVELLRASLPHTDES
QKKLLLNFAQRSMPVTGFNAHGGNSGQINPESVRG
NT seq 2448 nt   +upstreamnt  +downstreamnt
atggagagatctggatggaaggatctcagcgacttcaccgaccaatccagcagctcattt
tctgattcggcgcggtttgatgctgcgcagtatactttttttgggaaaggtgcggtggat
gaagtggaattggggggatttgaagatgaggatgggtttgcttctggagttgaaggcaga
attggtggggaagatgatctcaatgagtatcatttgtttgacaaagatgagggatcagga
ttaggaccattatctgaaatagatgatctggctactacatttgctaagttaaacaaagtt
gtttctggacctaggcatcctggtgttattggtgatcgaggatctggatctttctcaagg
gaaagttcatcagctactgaatgggcacgagaagcagattttcccgattgggttgaccat
cacatgtcagactcagaatgctatgaggaaaacaagagatggtcatcacagccacatcgt
tcttcattgtaccgccaagagtctacaccattatatagaacttcatcataccctgagcag
cagcaaatgcttcaacactgttctagtgagcctattttagtcccaaaatcagcattcact
tctttccctccaccaggatcacaacaagcttcaccaaatagtgctcatcgtattagtttg
tcatctctttctggtggacttcagttgcctttctcttcttcgagcaactcttcattagct
aattctgctctccatatgtctggcctgccacatggataccattataacccaaacatgtca
cgtttatcctcacccaatatctcacgtcacaatcaacatcaaaatcaatggagtagtcac
gctggtgttcttcatggggatcagtctattctcttaaacaatattatgcagcatcagttt
caaaatgggttattaccatcacatctgctgtccccacagcagcagagaggacaactttca
tttcaaccatcattagcccatttttcagcattacagtcacaaatatataatacctacccc
tctcctgcacagttaagcaagtatggattagcagaaaagaaagaagcaaaacctaaatct
ggaaagagcagacactctgtcagattttcccatcaagggtctgatgctagcagcagccat
aaaagtgagattaattttccacaaattaaatctaagtacatgactgctgaagagattgag
agcattcttaagatgcagcttgctgctacccatgggagtgatccgtatgtggacgattat
taccatcaagcaagtcttgctaagaaatctgctgaaacaaggtcaaggtttcgtttttgc
ccatctcaccagaaagaacaatcttctcgttcccgtaacagttctgaacaacagccacat
ctccatgttgatgctcttggaagggtttgcttctcttcaattcgcaggcctcgtccactt
cttgaagttgaccctcctccctctgcctgtggggatggtaatgctgaacagaaattatct
gagaagcctttggaagaggagccaatgcttgctgctaggataactactgaagatgggtta
agtcttcttcttgaggtcgatgacattgatcggctgttacagttcactcaacctcaagat
ggtgggagccagctcaagcggaaacgtcatgttctattagaaggattagctgcatctctt
cagctagttgatcccttgggaaaaaatggaaatgctgtgggtctctcccccaaggatgat
atagtgtttctacgaatagtttccttgtccaaaggccgaaaacttatttcaaagtttctt
cagctactcattcctggtagtgagctggctcgaatagtttgcatggccatcttccgccat
ctaagatttttgtttggtggcttgccatctgatgcagaagcaactattaccatcaacgat
cttgccaaaagagtctctctatgtgttagtggaatggatcttaattcactcagtgcttgt
cttgctgcagttgtttgttcctccgaacagccgccacttcgtccagtaggcagtcctgct
ggagatggtgcatcagtcattttgaagtctgttttagaaagagctacaaccctgttaaga
gatcctcagtttggcggaaactacagcatccctaatcctgcactttggcaggcttctttc
gatgccttcttcggtctcctgacaaaatactgtgtgagcaagtatgacagtattgtgcag
tcgttagttgttcagaatgcaccgaacacagaggcaattggtccagaggctgcaaaggct
gtaagtagagagatgcccgtggaacttcttcgtgctagtctgcctcatactgatgagagt
cagaagaagttgctactgaatttcgcccagaggtccatgcccgttactggatttaatgct
catggtggaaacagcggacagataaaccccgagtctgtcagaggctga

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