Salvia hispanica (chia): 125193977
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Entry
125193977 CDS
T09851
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125193977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125193977
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125193977
mRNA degradation factors
5'-3' decay
Decapping complex
125193977
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
125193977
NCBI-ProteinID:
XP_047947909
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Position
6:complement(46778914..46783021)
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AA seq
815 aa
AA seq
DB search
MERSGWKDLSDFTDQSSSSFSDSARFDAAQYTFFGKGAVDEVELGGFEDEDGFASGVEGR
IGGEDDLNEYHLFDKDEGSGLGPLSEIDDLATTFAKLNKVVSGPRHPGVIGDRGSGSFSR
ESSSATEWAREADFPDWVDHHMSDSECYEENKRWSSQPHRSSLYRQESTPLYRTSSYPEQ
QQMLQHCSSEPILVPKSAFTSFPPPGSQQASPNSAHRISLSSLSGGLQLPFSSSSNSSLA
NSALHMSGLPHGYHYNPNMSRLSSPNISRHNQHQNQWSSHAGVLHGDQSILLNNIMQHQF
QNGLLPSHLLSPQQQRGQLSFQPSLAHFSALQSQIYNTYPSPAQLSKYGLAEKKEAKPKS
GKSRHSVRFSHQGSDASSSHKSEINFPQIKSKYMTAEEIESILKMQLAATHGSDPYVDDY
YHQASLAKKSAETRSRFRFCPSHQKEQSSRSRNSSEQQPHLHVDALGRVCFSSIRRPRPL
LEVDPPPSACGDGNAEQKLSEKPLEEEPMLAARITTEDGLSLLLEVDDIDRLLQFTQPQD
GGSQLKRKRHVLLEGLAASLQLVDPLGKNGNAVGLSPKDDIVFLRIVSLSKGRKLISKFL
QLLIPGSELARIVCMAIFRHLRFLFGGLPSDAEATITINDLAKRVSLCVSGMDLNSLSAC
LAAVVCSSEQPPLRPVGSPAGDGASVILKSVLERATTLLRDPQFGGNYSIPNPALWQASF
DAFFGLLTKYCVSKYDSIVQSLVVQNAPNTEAIGPEAAKAVSREMPVELLRASLPHTDES
QKKLLLNFAQRSMPVTGFNAHGGNSGQINPESVRG
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctggatggaaggatctcagcgacttcaccgaccaatccagcagctcattt
tctgattcggcgcggtttgatgctgcgcagtatactttttttgggaaaggtgcggtggat
gaagtggaattggggggatttgaagatgaggatgggtttgcttctggagttgaaggcaga
attggtggggaagatgatctcaatgagtatcatttgtttgacaaagatgagggatcagga
ttaggaccattatctgaaatagatgatctggctactacatttgctaagttaaacaaagtt
gtttctggacctaggcatcctggtgttattggtgatcgaggatctggatctttctcaagg
gaaagttcatcagctactgaatgggcacgagaagcagattttcccgattgggttgaccat
cacatgtcagactcagaatgctatgaggaaaacaagagatggtcatcacagccacatcgt
tcttcattgtaccgccaagagtctacaccattatatagaacttcatcataccctgagcag
cagcaaatgcttcaacactgttctagtgagcctattttagtcccaaaatcagcattcact
tctttccctccaccaggatcacaacaagcttcaccaaatagtgctcatcgtattagtttg
tcatctctttctggtggacttcagttgcctttctcttcttcgagcaactcttcattagct
aattctgctctccatatgtctggcctgccacatggataccattataacccaaacatgtca
cgtttatcctcacccaatatctcacgtcacaatcaacatcaaaatcaatggagtagtcac
gctggtgttcttcatggggatcagtctattctcttaaacaatattatgcagcatcagttt
caaaatgggttattaccatcacatctgctgtccccacagcagcagagaggacaactttca
tttcaaccatcattagcccatttttcagcattacagtcacaaatatataatacctacccc
tctcctgcacagttaagcaagtatggattagcagaaaagaaagaagcaaaacctaaatct
ggaaagagcagacactctgtcagattttcccatcaagggtctgatgctagcagcagccat
aaaagtgagattaattttccacaaattaaatctaagtacatgactgctgaagagattgag
agcattcttaagatgcagcttgctgctacccatgggagtgatccgtatgtggacgattat
taccatcaagcaagtcttgctaagaaatctgctgaaacaaggtcaaggtttcgtttttgc
ccatctcaccagaaagaacaatcttctcgttcccgtaacagttctgaacaacagccacat
ctccatgttgatgctcttggaagggtttgcttctcttcaattcgcaggcctcgtccactt
cttgaagttgaccctcctccctctgcctgtggggatggtaatgctgaacagaaattatct
gagaagcctttggaagaggagccaatgcttgctgctaggataactactgaagatgggtta
agtcttcttcttgaggtcgatgacattgatcggctgttacagttcactcaacctcaagat
ggtgggagccagctcaagcggaaacgtcatgttctattagaaggattagctgcatctctt
cagctagttgatcccttgggaaaaaatggaaatgctgtgggtctctcccccaaggatgat
atagtgtttctacgaatagtttccttgtccaaaggccgaaaacttatttcaaagtttctt
cagctactcattcctggtagtgagctggctcgaatagtttgcatggccatcttccgccat
ctaagatttttgtttggtggcttgccatctgatgcagaagcaactattaccatcaacgat
cttgccaaaagagtctctctatgtgttagtggaatggatcttaattcactcagtgcttgt
cttgctgcagttgtttgttcctccgaacagccgccacttcgtccagtaggcagtcctgct
ggagatggtgcatcagtcattttgaagtctgttttagaaagagctacaaccctgttaaga
gatcctcagtttggcggaaactacagcatccctaatcctgcactttggcaggcttctttc
gatgccttcttcggtctcctgacaaaatactgtgtgagcaagtatgacagtattgtgcag
tcgttagttgttcagaatgcaccgaacacagaggcaattggtccagaggctgcaaaggct
gtaagtagagagatgcccgtggaacttcttcgtgctagtctgcctcatactgatgagagt
cagaagaagttgctactgaatttcgcccagaggtccatgcccgttactggatttaatgct
catggtggaaacagcggacagataaaccccgagtctgtcagaggctga
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