Salvia hispanica (chia): 125193989
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Entry
125193989 CDS
T09851
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125193989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125193989
Spliceosome [BR:
shis03041
]
Complex A
U1 snRNP components
U1 related factors
125193989
Complex B
125193989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
125193989
NCBI-ProteinID:
XP_047947929
LinkDB
All DBs
Position
6:complement(14572265..14584465)
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AA seq
1001 aa
AA seq
DB search
MASNPPPSGSQPHWSHPASGSMAPQNFAPPYPMQFRPAAQAPQGQHFMPQQTTSQFHPSG
QPQNMGMPPGQGQPMQQFMPRPTQPGHGAPSSYPQSMPMPSGMAQPQSTPPGQGVPYSSS
HTYAPSSFGLPQTGISMPPQFQPSSQMPMPVGSAGAQPWMHSNQGTPVVAPLQQGSLESF
PTTATVPAVNGSSSAQQSASDWQEYDAADGRRYYYNKATKQSSWEKPLELMTPLERADAS
SVWKEFTTPEGRKYYYNKETKQSKWTIPDELKLAREQAEKAAAETSRPETNASSAPPTVS
GSSGEQPPAADNLPNSTTSIGAAVGSSPVPATPVASDTKSPIVLVSETGVTPVAQTPVAS
TTGVSVGDTVSSSPSDVPVKLSSARISLETPSSQVGSSPSVGASVQDGEEEKKEIAVAAK
TNVAPVEEKTVDDEPVIYATKQEAKHAFKALLESANVEADWTWDQAMRVIINDKRYGALK
TLGERKQAFNEYLMQRKKIEAEERRLRQRKAKEEFMKMLEESEELTSSTRWSKAVTMFED
DTRFKAVDLEVDREDLFRNYLVDLQKKEKAKAQEEARRNRLEFRQFLESCDYIKVDSQWR
KVQDLLEDDERCTRLDKIDRLDIFQDYIRDLEKEEEEQKKIQKEQLRRAERKNRDAFRMM
LEEHIAAGTITAKTSWREYCQKVKDSEAYEAVASNTTGSTPKDLFEDLTEELEKKYDEDK
TQVKDVLKQEKITVASTWTFEDFKSSFGDNTVLSSISDINLQLVYKDLIDRAKEKEEKEV
KKRKRLAKDLTDKLSTIKELNMLSTWEECKPLIEESSEYRSMGEEDLCREVFDEYISRLQ
EKMKEKERKREEEKTKKEKEREEKDKRKDKERKEKDKDRDCDREKEKGKDNSRKDEETTE
NMDSVESHGYKDDRKREKEKEKKHRKRHQSTADDVSSDKEETKKSRRHGSDRRKSRKHAY
SPESDSESRHKRHRKDHRDGSKRSGDEELEDGELGEDGEIQ
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtaacccgcctccatctggttcacagccacattggtcacatcctgcgtctgga
tccatggctcctcagaattttgctcctccatatcctatgcaattccgtcctgccgcacag
gcgccacaaggccaacattttatgccgcaacaaactacatcacagttccatccatcagga
caaccacaaaatatgggaatgcctccaggtcaaggtcaaccaatgcaacagtttatgcca
cggcctacacaacctggccacggtgctccatcctcatatcctcaaagtatgcctatgcca
tcaggcatggcacagcctcagtcaactcctccaggccagggagttccatattcatcatca
catacttatgctccatcttcgtttggcttgccccagacaggcatcagcatgccaccccag
ttccaaccttcctcccaaatgcctatgcctgttggttctgctggggcacaaccgtggatg
cattcaaatcaaggtactcctgttgttgcaccactgcagcaaggcagcttggaatccttc
cccaccactgcaactgtaccagctgttaatggatctagttctgcccaacagtctgcatct
gattggcaagaatatgatgctgctgatggcagaaggtattattacaacaaggctacaaag
cagtctagttgggagaagcctcttgagttgatgacccctctagagagagctgatgcatca
agtgtttggaaggaattcactactcctgagggtagaaagtattattacaacaaggagaca
aagcaatcaaaatggacgatacccgatgaattgaagttggctcgtgaacaggctgaaaaa
gctgctgctgagacatcacggccggaaacgaatgctagctctgcaccacccacagttagt
ggttcttctggtgaacaaccacctgcagcggacaacttgccaaattccactacatcaata
ggagctgcagtgggttcgagtcctgtcccagctactccagttgcttctgatactaaatct
cccattgtgttggtctctgaaacaggagtcacacctgtagcgcagacacctgttgcaagt
acaactggagtgtcagtgggagacacagtgtcatcctccccttctgatgttccagttaaa
ttgtcaagcgcgaggatcagcttggaaactccttcatcacaagtggggtcaagtccctca
gttggggcttcggtccaagatggagaggaagagaaaaaagaaattgctgttgcagctaaa
acaaatgtggcaccggttgaagagaaaacagtggatgatgaacctgtcatatatgccacc
aagcaggaggcaaaacatgcctttaaagcattattagagtctgcaaatgtggaggctgat
tggacctgggaccaggctatgagggtgataattaatgacaaaagatatggtgctctgaaa
acgcttggtgaaagaaagcaagcattcaatgagtacttaatgcaaaggaaaaagatagag
gccgaggagaggcgtctcagacaaagaaaagcaaaggaggagtttatgaagatgttggaa
gagtccgaagaactcacatcatccacacgatggagcaaagcagtgacaatgtttgaagat
gatacccggttcaaggctgttgacctagaagtggatcgcgaggatctctttagaaactat
cttgtggaccttcagaaaaaggagaaggcaaaggctcaggaggaggctcgtcgaaacagg
ctggaatttaggcaatttctggaatcatgtgattatatcaaggtggatagccagtggcgg
aaggttcaagatcttctggaagatgatgagcggtgtacacgcctggataaaatagatcgg
ctcgacatctttcaggattatattcgtgatttggagaaggaggaggaagagcagaagaag
atacagaaggaacaacttagacgagctgagcgtaaaaaccgtgatgcatttcgtatgatg
ttggaggagcatattgctgctggcactattacagcaaaaacatcctggcgggaatattgt
caaaaagtcaaggattctgaggcttatgaggcagttgcatcaaacactactggttccacc
cccaaagatttgtttgaggatctaacagaagaattggagaaaaagtatgatgaagacaaa
acccaagtaaaggatgttttgaagcaggaaaagattacagttgcttcaacgtggacattt
gaagactttaagtcttcttttggagataatactgttttgtcctccatatctgacattaat
ttgcagctagtatacaaagatcttattgatcgagctaaagagaaagaagagaaagaggtt
aagaaacgtaaacgtctagccaaagatttaactgataaattgagcaccataaaggaatta
aatatgctatccacgtgggaggaatgcaaaccactaattgaggaaagctcagagtacagg
tccatgggagaagaagacctctgcagagaagtatttgatgaatatatctctcgtttacaa
gagaagatgaaggaaaaggagcgaaagcgagaggaagaaaagacgaaaaaggagaaagag
cgggaggagaaagacaagagaaaagataaagaaagaaaggagaaagataaagatagggac
tgcgacagagaaaaggagaaggggaaagataattcaagaaaggatgaagagactactgaa
aatatggattctgtggaatctcatggatacaaagatgacagaaaacgggaaaaggagaaa
gagaagaagcataggaagcggcatcagagcacggctgatgatgtgagttcagataaagag
gagacaaagaagtcccgcaggcatggcagtgaccgtagaaagtcaagaaagcatgcatat
tcacccgaatcagacagcgaaagcagacataaaagacacagaaaagatcaccgcgatgga
tcgaaacggagtggtgacgaggagctggaagatggcgaattgggtgaggatggggagatc
caatag
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