KEGG   Salvia hispanica (chia): 125194108
Entry
125194108         CDS       T09851                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
shis  Salvia hispanica (chia)
Pathway
shis04120  Ubiquitin mediated proteolysis
shis04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125194108
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    125194108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:shis04121]
    125194108
Enzymes [BR:shis01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125194108
Ubiquitin system [BR:shis04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    125194108
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     125194108
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_WDR19_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C zf-C3HC4_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_HPS5 zf-C3HC4 WD40_MABP1-WDR62_1st WD40_like WD40_RFWD3 zf-C3HC4_3 zf-RING_2 Beta-prop_IFT140_1st U-box Beta-prop_IFT122_1st zf-RING_UBOX Beta-prop_SCAP Beta-prop_WDR35_TULP_N zf-C3HC4_4 Beta-prop_DCAF12 YbfN DUF1664 WDR90_beta-prop_4th zf-RING_5 YpoC zf-Nse zf-RING_6 DUF3818 zf-RING_10
Other DBs
NCBI-GeneID: 125194108
NCBI-ProteinID: XP_047948107
LinkDB
Position
6:37351302..37357284
AA seq 654 aa
MEDCSTTFTVPAADPAPEAEDKELSCPICMQIMQDVFLTSCGHSFCYMCIVTHLHNKSDC
PCCAHFLTPSQLFPNFLLNKLLKKTSTHQLSKLASPVEQFRHSLEQGCQVSVKELDSLVS
LVTEKKRKLEQEEAERNMQILLDFLHCLRKQKVNELNEVQSDLQYIKEDLNSVERHRIEL
YQARERCSVKLKILSSDPLGIRSRTSSRPMDRNMSGPVSNSYNLRGITSMNFQFTKDEAK
AQVNNIPRTQSKEAAPSEPTSQHMSQSGLAVMRKKRVHAQFNELQEFYLQKRRQLVNQIE
KQGHKDNTIIRREGYSSGLADFQSVLSTFTRFSRLRVIAELRHGDLFHSPNIVSSIEFDR
DDELFATAGVSRRIKVFDFSSVVNEPTDVHCPVVEMTTRSKLSCLSWNKFTKNHIASSDY
EGIVTVWDAGTQQSIMEYEEHEKRAWSVDFSPTEPSMLVSGSDDCKVKIWCTKQEGSVLN
IDMKTNICCVKYNPESSKHVAVGSADHHIHYYDLRNPCHPVSVFSGHNKAVSYVKFLSSN
ELASASTDSTLRLWDVKDNLLVRTFRGHTNEKNFVGLTVNNDFLACGSETNEVSVYHKAI
TKPVTWHKFGSPDVEDVEEDAGSYFISAVCWKVGSPTILAANSRGTIKVLALTA
NT seq 1965 nt   +upstreamnt  +downstreamnt
atggaggattgctcgacgactttcacagtgccagcggcggatccagctccggaggcggag
gacaaggagttgtcgtgcccaatttgtatgcagattatgcaggacgtcttcctaacctcg
tgcggccatagcttctgctacatgtgcatcgtcactcatctccacaacaagagcgattgc
ccctgctgcgctcactttctcactccctctcagctcttccccaattttctcctcaacaag
ctattgaagaagacatctacccatcaactatcaaaattagcatctccagtagaacaattt
cgtcattcactggaacagggctgtcaagtttcagtgaaggagttagactctctagtgtct
ctggttacagagaaaaagagaaaattggaacaagaagaagcagagagaaacatgcagatt
ctgctggacttcttacactgcttaaggaagcaaaaagttaatgaactcaacgaggtgcaa
agtgatctgcaatacatcaaggaagacttaaattctgtggaaagacataggatagagctg
taccaagcaagagaaaggtgttcagttaaactgaagattctctctagtgatcctcttgga
attagatcccgcacttcctctaggccaatggatagaaacatgtcaggccctgtgtccaac
tcttacaacttaagaggaattacttctatgaacttccagttcactaaagacgaagcgaag
gctcaagttaataatatccctcgaacccagagcaaggaagctgctccgagcgaaccaact
tcacaacatatgagccaatctggtttggcagttatgcggaaaaagcgagtccatgcacag
tttaacgaacttcaggaattttacttacaaaagagacgtcaattggtcaaccaaatagag
aagcaaggacataaagataacaccatcattagaagagaaggttatagttctggtttagca
gatttccagtcagttctaagtacgtttactcggttcagtcgattacgagtaattgctgaa
cttagacacggtgacctattccactcacccaatatcgtttcaagtatagagtttgatcgg
gacgatgagctgtttgctactgctggagtttcacggcggataaaagtttttgatttctca
tcagttgtgaacgaacctacagatgtgcattgccctgttgttgagatgactactagatct
aagcttagctgcttgagctggaacaagttcacgaaaaatcacatagctagtagtgattat
gaaggcatagtaactgtctgggatgctggtactcaacaaagtatcatggaatatgaggag
cacgagaaacgggcatggagtgttgacttctccccaacagagccttcaatgcttgtttct
ggtagtgatgactgcaaggtcaaaatttggtgcacaaagcaagaaggtagcgttctcaac
atcgatatgaagactaatatatgctgtgtgaagtacaatcccgagtccagcaaacatgtt
gcggttggctctgctgatcaccatattcactactacgacttgagaaacccctgccatcca
gtctctgtgttcagtggtcataataaggcggtttcatatgtgaaattcctctccagcaac
gagcttgcttctgcttcaacagatagcactctccggctatgggacgtgaaggacaatctg
ctcgtccgtacatttagagggcacaccaacgagaagaatttcgtaggcctaacagtcaac
aatgatttcctagcttgtggcagtgaaacaaatgaagtctctgtctatcacaaggctatc
acgaaacccgtgacatggcataaatttggatccccggatgtcgaggacgtcgaggaagat
gcgggatcatacttcataagcgcagtatgctggaaagttggaagtcccaccatattagct
gccaacagtagaggaacaatcaaggtgttggccctcactgcttga

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